Larsson T T - OmicsDI

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Unknown (879)
Transcriptomics (77)
Proteomics (39)
Metabolomics (7)
Genomics (6)

Organisms

Homo sapiens (45)
Mus musculus (38)
Drosophila melanogaster (7)
Sus scrofa (4)
Rhizobium leguminosarum (3)
Amphimedon queenslandica (2)
Platynereis dumerilii (2)
Oncorhynchus mykiss (2)
Oryza sativa Japonica Group (2)
Rattus norvegicus (2)
Hypsibius dujardini (1)
Mnemiopsis leidyi (1)
Strongylocentrotus purpuratus (1)
Mycobacterium tuberculosis CDC1551 (1)
Nematostella vectensis (1)
Medicago truncatula (1)
Hordeum vulgare (1)
Caenorhabditis elegans (1)
Triticum aestivum (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Trichoderma reesei RUT C-30 (1)

Repository

biostudies-arrayexpress (80)
pride (33)
MetaboLights (7)
MassIVE (4)
EGA (3)
jPOST (2)

Tissue

Cell culture (7)
Permanent cell line cell (7)
Heart (6)
C2C12 cell (4)
Fibroblast (3)
Skeletal muscle cell line (3)
Epithelial cell of pancreas (2)
Kidney (2)
Liver (2)
Muscle cell (2)
Pancreatic adenocarcinoma cell line (2)
Blood (1)
Bone cancer cell line (1)
Bone cell (1)
Brain (1)
Cerebrospinal fluid (1)
Cervical cancer cell line (1)
Culture supernatant (1)
Epithelial cell (1)
Fungal cell (1)
HeLa cell (1)
Lung (1)
Pneumocyte (1)
Retina (1)
Skeletal muscle myoblast (1)
Uvea (1)

Disease

Adenocarcinoma (1)
Normal (1)
Alzheimer's disease (1)
Cervix carcinoma (1)
Idiopathic pulmonary fibrosis (1)
Pancreatic ductal adenocarcinoma (1)
Pancreatic ductal carcinoma (1)
Parkinson's disease (1)
Pheochromocytoma (1)
Uveal melanoma (1)
Viral infectious disease (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (22)
Bottom-up proteomics (9)
Data-dependent acquisition (8)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Illumina 450K, Bisulfite-Seq (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
NextSeq 500 (3)
Xevo G2 QTOF (Waters) (3)
Axon- GenePix4000B (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 3000 (2)
Microcentrifuge (1)
C1 Single-Cell Auto Prep System, Fluidigm (1)
Covaris, NEBNext Ultra II DNA library prep kit (1)
Computater Servers UPPMAX-SNIC. (1)
Illumina Tru-seq RNA (1)
NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE) (1)
Dynamic light scattering and zeta potential. The experiments were performed on a Malvern Zetasizer NanoZS instrument using a He-Ne laser (Max, 5 mW) at 633 nm. (1)
ScanArray scanning hardware (1)
BGISEQ-500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion ETD (1)
Q Exactive Plus (1)
Bruker (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2016 (16)
2012 (11)
2020 (10)
2026 (10)
2013 (9)
2024 (8)
2015 (8)
2010 (6)
2021 (5)
2018 (5)
2014 (5)
2011 (5)
2023 (4)
2017 (4)
2007 (4)
2025 (4)
2019 (4)
2008 (3)
2022 (2)
2006 (2)
2009 (1)

CHEBI ID

CHEBI:18089 (3)
CHEBI:28717 (3)
CHEBI:105799 (2)
CHEBI:116314 (2)
CHEBI:131438 (2)
CHEBI:131440 (2)
CHEBI:131443 (2)
CHEBI:131590|CHEBI:91296 (2)
CHEBI:132328|CHEBI:16113 (2)
CHEBI:15354 (2)
CHEBI:15756 (2)
CHEBI:15843 (2)
CHEBI:16347 (2)
CHEBI:16411 (2)
CHEBI:16737 (2)
CHEBI:16755 (2)
CHEBI:16827 (2)
CHEBI:16828 (2)
CHEBI:16919 (2)
CHEBI:16990 (2)
CHEBI:17295 (2)
CHEBI:17308 (2)
CHEBI:17351 (2)
CHEBI:17650 (2)
CHEBI:17687 (2)
CHEBI:17750 (2)
CHEBI:17775 (2)
CHEBI:17895|CHEBI:89461 (2)
CHEBI:18102 (2)
CHEBI:18185 (2)

Metabolite Name

1,2-dilinoleoyl-sn-glycero-3-phosphocholine (2)
1,2-dioleoyl-sn-glycero-3-phosphocholine|1,2-dipetroselenoyl-sn-glycero-3-phosphocholine (2)
1,2-dipalmitoleoyl-sn-glycero-3-phosphocholine (2)
1,2-dipalmitoyl-sn-glycero-3-phosphocholine (2)
1,3,7-Trimethyluric acid (2)
1-O-1'-(Z)-octadecenyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (2)
1-Stearoyl-2-Hydroxy-sn-Glycero-3-Phosphoethanolamine (2)
1-arachidoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
1-linoleoyl-2-stearoyl-sn-glycerol (2)
1-oleoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
1-oleoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (2)
1-oleoyl-2-palmitoyl-sn-glycero-3-phosphocholine (2)
1-palmitoyl-2-docosahexaenoyl-sn-glycero-3-phosphocholine (2)
1-palmitoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
1-palmitoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (2)
1-stearoyl-2-arachidonoyl-sn-glycero-3-phosphoethanolamine|C15-20:4 Phosphatidylcholine (2)
1-stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
1-vaccenoyl-2-palmitoyl-sn-glycerol (2)
10-nitro-9E-octadecenoic acid|9-nitro-9E-octadecenoic acid (2)
17-phenyl trinor Prostaglandin E2|17-phenyl trinor Prostaglandin D2 (2)
2,6 dimethylheptanoyl carnitine (2)
2-(4-hydroxyphenyl)ethanol (2)
2-Ketohexanoic acid (2)
3-Indolepropionic acid (2)
3a,6b,7b-Trihydroxy-5b-cholanoic acid (2)
4-Androsten-11Beta-ol-3,17-dione|11β-Hydroxy-4-androstene-3,17-dione (2)
4-Hydroxy-3-methylbenzoic acid (2)
6-hydroxy-5-cholestanol|cholesterol (2)
7-Ketocholesterol (2)
Acetaminophen (2)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (20)
RNA-seq of coding RNA from single cells (5)
ChIP-chip by tiling array (4)
Human - Two-color microarray (3)
Cell line - Single-cell sequencing (2)
Unknown experiment type (2)
DNA-seq (2)
Transcription profiling by tiling array (1)
ChIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (107)
2020 (90)
2024 (83)
2021 (83)
2023 (75)
2025 (71)
2019 (71)
2016 (68)
2018 (64)
2017 (50)
2015 (40)
2012 (32)
2014 (29)
2013 (26)
2011 (18)
2010 (12)
2026 (11)
2009 (6)
2008 (6)
2007 (6)
2006 (4)
2005 (3)
2004 (2)
2002 (1)
1999 (1)

Lab affiliation

Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. (4)
Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden. (4)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (2)
Utrecht University (2)
- Inst. of Neuroscience and Physiology, Dept. of Psychiatry and Neurochemistry, The Sahlgrenska Academy at University of Gothenburg, Mölndal, Sweden - Clinical Neurochemistry Laboratory, Sahlgrenska University Hospital, Mölndal, Sweden - Department of Molecular Neuroscience, UCL Institute of Neurology, Queen Square, London, UK (1)
Biochemical Proteomics Group, Department of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, 82152-Martinsried, Germany (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 77 Stockholm, Sweden (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17177, Sweden Max Planck Institute Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden (1)
Department of Medical Biochemistry and Microbiology, Uppsala University, Sweden (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, 50931 Cologne, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 77 Stockholm, Sweden Max Planck Institute Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm, Sweden. (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, SE-17177, Sweden Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, 171 77 Stockholm, Sweden (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)
Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden. (1)
Depratment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. (1)
Derpatment of Medical Biochemistry, Uppsala University, Uppsala, Sweden. (1)
Division of Genome Sciences and Cancer, The John Curtin School of Medical Research, The Australian National University, Canberra (1)
Industrial Biotechnology, Chalmers University of Technology (1)
Infection Medicine Proteomics BMC D13 Klinikgatan 28 22241 Lund Sweden (1)
Karolinska Institute Division of Molecular Metabolism Department of Medical Biochemistry and Biophysics (1)
Karolinska Institutet, Stockholm, Sweden (1)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b (1)
Medical Biochemistry and Biophysics department, Karolinska Institutet, Stockholm, Sweden (1)
Proteomics Core Facility, University of Gothenburg, Sweden (1)
Uppsala University (1)
Uppsala University, Uppsala, Sweden (1)

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Transcription profiling of human memory T cells stimulated with Phl p-extract in healthy and allergic individuals

Differential transcriptional response of memory T cells stimulated with Phl p-extract in healthy and allergic individuals.

ORGANISM(S): Homo sapiens

2006-01-01 | E-MEXP-243 | biostudies-arrayexpress

Distinct translational control in CD4+ T-cell subsets

Regulatory T cells expressing the transcription factor Foxp3 play indispensable roles for the induction and maintenance of immunological self-tolerance and immune homeostasis. Genome-wide mRNA expression-studies have defined canonical signatures of T-cell subsets. Changes in steady-state mRNA levels...

ORGANISM(S): Mus musculus

2013-06-01 | E-GEOD-45401 | biostudies-arrayexpress

Transcriptional correlates of FOXP3 expression in suppressive and non-suppressive primary human Treg cell clones.

Analysis of the transcriptional correlates of FOXP3 expression in suppressive and non-suppressive primary human Treg cell clones. Individual CD4+CD25High or Cd4+CD25- T cells were isolated from human PBMCs and expanded in vitro. After 3 weeks of expansion, individual clones were analysed for FOXP3 e...

ORGANISM(S): Homo sapiens

2015-05-06 | E-GEOD-65650 | biostudies-arrayexpress

Identification of differentially expressed genes upon shRNA knockdown of TAL1 and its regulatory partners in T-ALL cells (Jurkat)

The oncogenic transcription factor TAL1/SCL is aberrantly overexpressed in over 40% of cases of T-cell acute lymphoblastic leukemia (T-ALL), emphasizing the importance of the TAL1-regulated transcriptional program in the molecular pathogenesis of T-ALL. Here we identify the core transcriptional regu...

ORGANISM(S): Homo sapiens

2012-08-16 | E-GEOD-29179 | biostudies-arrayexpress

Core transcriptional regulatory circuit controlled by the TAL1 complex in human T-cell acute lymphoblastic leukemia

This SuperSeries is composed of the following subset Series: GSE29179: Identification of differentially expressed genes upon shRNA knockdown of TAL1 and its regulatory partners in T-ALL cells (Jurkat) GSE29180: ChIP-Seq of TAL1 and its regulatory partners in T-ALL cells (Jurkat) GSE33850: Core trans...

ORGANISM(S): Homo sapiens

2012-08-16 | E-GEOD-29181 | biostudies-arrayexpress

Co-culture of synovial tissue dendritic cells with autologous peripheral blood memory T-Cells across Active and Remission RA

To dissect the precise roles of ST-DC2 clusters and ST-iDC3 clusters in T-cell activation, we co-cultured each cluster separately with autologous memory CD4pos T-cells. FACS-sorted ST-DC2 clusters and ST-iDC3 clusters from synovial tissue of active RA or remission RA were co-cultured for 5 days wit...

ORGANISM(S): Homo sapiens

2024-12-09 | E-MTAB-14191 | biostudies-arrayexpress

OPHTHALMIC FINDINGS IN LATE STAGE SJOGREN-LARSSON SYNDROME.

Not available

S-EPMC5729048 | biostudies-literature

BLUEPRINT DNA methylation profiles of monocytes, T cells and B cells in type 1 diabetes-discordant monozygotic twins

EGAS00001001598 | EGA

Novel and recurrent ALDH3A2 mutations in Italian patients with Sjogren-Larsson syndrome.

Not available

S-EPMC3057174 | biostudies-literature

Phenotypic variability among adult siblings with Sjogren-Larsson syndrome.

Not available