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Transcriptomics (164)
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Organisms

Homo sapiens (198)
Mus musculus (46)
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Caenorhabditis elegans (9)
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Organisms

Mus musculus (7)
hydrothermal vent metagenome (2)
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Thermosipho melanesiensis BI429 (1)
Hydrogenivirga sp. 128-5-R1-1 (1)
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Repository

biostudies-arrayexpress (172)
pride (107)
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Tissue

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Disease

Melanoma (6)
COVID-19 (3)
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Cardiovascular system disease (1)
Charcot-Marie-Tooth disease axonal type 2C (1)
Childhood medulloblastoma (1)
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Disease free (1)
Krabbe disease (1)
Lung adenocarcinoma (1)
Monkeypox (1)
Neurological dysfunction (1)
Obsessive-compulsive disorder (1)
Rheumatoid arthritis (1)
Schmid metaphyseal chondrodysplasia (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (107)
Shotgun proteomics (42)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (12)
Data-dependent acquisition (11)
SWATH MS (10)
Data-independent acquisition (8)
HDMSE (8)
Mass spectrometry (5)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SRM/MRM (3)
Gel-based experiment (2)
MSE (2)
Top-down proteomics (2)
Illumina Genome Analyzer II (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Life Tech - Solid (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (3)
Illumina HiSeq 2500 (2)
LTQ Orbitrap Elite (2)
10x machine (1)
Agilent microarray Scanner (1)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
Agilent miRNA Complete Labeling and Hyb Kit (1)
Extraction kit (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
TripleTOF 6600 (1)
ZenoTOF 7600 (1)
6540 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
LTQ-Orbitrap (1)
ThermoFinigan LTQ (1)

Publication Date

2010 (33)
2013 (29)
2022 (24)
2024 (20)
2021 (20)
2012 (19)
2014 (18)
2026 (18)
2025 (17)
2015 (15)
2023 (14)
2009 (13)
2008 (13)
2020 (13)
2011 (12)
2016 (9)
2019 (8)
2005 (8)
2018 (7)
2017 (4)
2007 (3)
2006 (1)

UNIPROT ID/AC

A4QPA9 (1)
P00533 (1)
P01112 (1)
P01133 (1)
P04049 (1)
P20936 (1)
P28482 (1)
P62993 (1)
P98077 (1)
Q02750 (1)
Q07889 (1)
1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433S_MOUSE (1)
1433T_MOUSE (1)
1433Z_MOUSE (1)
1A1L1_MOUSE (1)
2A5A_MOUSE (1)
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2A5G_MOUSE (1)
2AAA_MOUSE (1)
2AAB_MOUSE (1)
2ABA_MOUSE (1)
2ABB_MOUSE (1)
2ABD_MOUSE (1)
2ABG_MOUSE (1)
3BP1_MOUSE (1)
3BP5_MOUSE (1)

CHEBI ID

CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:131739 (1)
CHEBI:131740 (1)
CHEBI:132538 (1)
CHEBI:132960 (1)
CHEBI:132968 (1)
CHEBI:136075 (1)
CHEBI:15318 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15727 (1)
CHEBI:15956 (1)
CHEBI:15978 (1)
CHEBI:16020 (1)
CHEBI:16027 (1)
CHEBI:16077 (1)
CHEBI:16264 (1)
CHEBI:16335 (1)
CHEBI:16436 (1)
CHEBI:16566 (1)
CHEBI:16680 (1)
CHEBI:16695 (1)
CHEBI:16704 (1)
CHEBI:16708 (1)
CHEBI:16750 (1)
CHEBI:16761 (1)
CHEBI:16765 (1)
CHEBI:16796 (1)
CHEBI:16811 (1)

Metabolite Name

1-METHYLADENOSINE (1)
3-PHOSPHOGLYCERATE (1)
5-HYDROXYTRYPTOPHAN (1)
6-PHOSPHOGLUCONATE (1)
ACETYLCHOLINE (1)
ADENINE (1)
ADENOSINE (1)
ADENOSINE 5'-DIPHOSPHATE (1)
ADENOSINE DIPHOSPHATE RIBOSE (1)
ADENOSINE-MONOPHOSPHATE (1)
ALPHA-D-GLUCOSE (1)
ANSERINE (1)
ARGININE (1)
ASPARAGINE (1)
ASPARTATE (1)
BETA-NICOTINAMIDE ADENINE DINUCLEOTIDE (1)
BIOTIN (1)
CAFFEINE (1)
CARNOSINE (1)
CHOLINE (1)
CITICOLINE (1)
CORTICOSTERONE (1)
CORTISOL (1)
CORTISONE (1)
CREATINE (1)
CYCLIC AMP (1)
CYTIDINE (1)
CYTIDINE 2',3'-CYCLIC PHOSPHATE (1)
Cer d18:1/16:0 (1)
EPINEPHRINE (1)

First Public Date

2024 (6)
2013 (5)
2025 (4)
2014 (3)
2026 (2)
2023 (2)
2022 (2)
2020 (2)
2021 (1)
2019 (1)
2018 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (3)
University of Colorado, Anschutz Medical Campus (3)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Functional Proteomics, ICR (2)
Head of Laboratory of Neuro-Oncology, Neurology, Clinical & Cancer Proteomics (2)
King's College London, Chemistry Department, 7 Trinity Street, London, SE1 1DB, UK (2)
Livestock Genomic Group, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia, 4072 (2)
MRC-University of Glasgow Centre for Virus Research, Sir Michael Stoker Building, Garscube Campus, 464 Bearsden Road, Glasgow G61 1QH, Scotland (UK) (2)
Professor of Pharmacology, Duke University (2)
hong kong baptist university (2)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany (1)
Biochemistry Center Heidelberg (BZH) INF 328 69120 Heidelberg (1)
Biochemistry Center Heidelberg University of Heidelberg Germany (1)
Biochemistry, University of Colorado, Boulder (1)
Biomedical Research Institute of New Jersey (BRInj) 140 East Hanover Ave Cedar Knolls New Jersey 07927 (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH, Utrecht, The Netherlands and Netherlands Proteomics Center, Padualaan 8, 3584 CH, Utrecht, The Netherlands (1)
Biozentrum der LMU München Pflanzenwissenschaften Großhaderner Str. 2-4 82152 Planegg-Martinsried Germany (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Cell Biology & Physiology, Washington University School of Medicine in St. Louis (1)
Center for Cancer and Immunology Research, Children’s Research Institute, Children’s National Health System (1)
Charite universitymedicine berlin (1)
Charité Universitätsmedizin, Department of Biochemistry, 10117 Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, Berlin, Germany (1)
Chemistry Department, King's College London (1)
College of Science, Mathematics, and Technology, Wenzhou-Kean University (1)
Consortium of Fibrosis Research and Translation Department of Medicine-Cardiology Department of Biochemistry and Molecular Genetics University of Colorado Anschutz Medical Campus (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine (1)

IsPrivate

False (1)

Classification

protozoa (1)
bacteria (1)

Modification

144.102062 (1)
15.994915 (1)
45.987721 (1)
Not available (1)

Study type

Transcription profiling by array (91)
RNA-seq of non coding RNA (21)
RNA-seq of coding RNA (18)
Comparative genomic hybridization by array (12)
ChIP-seq (8)
MicroRNA profiling by array (6)
Unknown experiment type (4)
Methylation profiling by array (3)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by tiling array (2)
Genotyping by array (2)
Transcription profiling by MPSS (1)
DNA-seq (1)

Release Date

2022 (813)
2021 (665)
2025 (644)
2023 (639)
2024 (548)
2020 (536)
2019 (403)
2018 (373)
2017 (303)
2016 (297)
2015 (244)
2014 (236)
2013 (158)
2012 (137)
2010 (132)
2011 (114)
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2009 (81)
2008 (57)
2007 (40)
2005 (28)
2006 (24)
2004 (22)
2003 (17)
2002 (11)
2000 (10)
2001 (4)
1999 (2)
1998 (2)
1997 (1)

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MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Mouse liver assays)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-02 | MTBLS1266 | MetaboLights

MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Standard mixture assay)

2021-11-05 | MTBLS1311 | MetaboLights

Escherichia coli strain:LAU-ECH-37

Escherichia coli strain:LAU-ECH-37 Genome sequencing and assembly

PRJNA698342 | ENA

Characterization of the piRNA Complex from Rat Testes

This data series contains the sequences and read counts of Piwi-interacting RNAs and other small RNAs from mouse and rat testes extracts. In a search for different classes of small RNAs that might be involved in transcriptional gene silencing, we encountered a novel class of small RNAs within mamma...

ORGANISM(S): Mus musculus

2006-07-02 | E-GEOD-5026 | biostudies-arrayexpress

Quantifying grating defects in X-ray Talbot-Lau interferometry through a comparative study of two fabrication techniques.

Not available

S-EPMC12022164 | biostudies-literature

454 sequencing Eastern Lau Spreading Center (SW Pacific)

Metalliferous deposits from hydrothermal vent fields along the Eastern Lau Spreading Center (SW Pacific)

PRJEB13681 | ENA

Analysis of a silicon comb structure using an inverse Talbot-Lau neutron grating interferometer.

Not available

S-EPMC8894421 | biostudies-literature

Simultaneous Maximum-Likelihood Reconstruction of Absorption Coefficient, Refractive Index and Dark-Field Scattering Coefficient in X-Ray Talbot-Lau Tomography.

Not available

S-EPMC5047447 | biostudies-literature

Forest plant and bird communities in the Lau Group, Fiji.

Not available

S-EPMC3012085 | biostudies-literature

The matricellular protein CCN1 activates a pro-inflammatory genetic program in murine macrophages

Effects of the matricellular protein CCN1 on macrophage inflammatory gene expression was tested in a macrophage cell line I-13.35. CCN1 (CYR61) is a matricellular protein that is highly expressed at sites of inflammation and wound repair. In these contexts, CCN1 can modify the activities of specifi...

ORGANISM(S): Mus musculus

2010-05-14 | E-GEOD-19731 | biostudies-arrayexpress

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