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Unknown
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Models
(297)
Transcriptomics
(149)
Proteomics
(35)
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(29)
Metabolomics
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Multiomics
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Organisms
Homo sapiens
(262)
Mus musculus
(71)
Saccharomyces cerevisiae
(17)
Rattus norvegicus
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Rattus
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Escherichia coli
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Oryctolagus cuniculus
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Arabidopsis thaliana
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cellular organisms
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Cavia porcellus
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Halobacterium salinarum
(6)
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(3)
Escherichia coli K-12
(3)
Saccharomyces cerevisiae S288C
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Ovis aries
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Komagataella phaffii GS115
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Repository
BioModels
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biostudies-arrayexpress
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pride
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Normal
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(1)
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(1)
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(1)
Technology Type
Mass Spectrometry
(31)
Shotgun proteomics
(18)
Mass spectrometry
(15)
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(4)
Data-dependent acquisition
(4)
Affinity purification coupled with mass spectrometry proteomics
(3)
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(2)
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(2)
SWATH MS
(2)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500
(1)
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(1)
DiaPASEF
(1)
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(1)
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(1)
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(1)
Instrument Platform
Illumina NovaSeq 6000
(10)
Liquid Chromatography MS - positive - reverse phase
(9)
Illumina HiSeq 2500
(7)
NextSeq 500
(7)
Liquid Chromatography MS - negative - reverse phase
(7)
Illumina HiSeq 4000
(6)
GenePix 4000A [Axon Instruments]
(3)
NextSeq 550
(3)
Illumina HiSeq 2000
(3)
Agilent G2565BA
(2)
Illumina Genome Analyzer IIx
(2)
Q Exactive
(2)
Q Exactive HF-X
(2)
Direct infusion MS - negative
(2)
Direct infusion MS - positive
(2)
Gas Chromatography MS - positive
(2)
Performed by Novogene; Illumina library preparation instrumentation (provider standard)
(1)
Chromatin IP kit
(1)
Immunomagnetic separation system (e.g., Miltenyi MACS separator), Tissue culture facilities (biosafety cabinet, CO₂ incubator) , Bench centrifuge
(1)
BGISEQ-500
(1)
Illumina HiSeq 1500
(1)
6540 Q-TOF LC/MS (Agilent)
(1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode)
(1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode)
(1)
Bruker
(1)
Exactive (Thermo Scientific)
(1)
Flow Injection Analysis MS - Alternating (FIA-MS (Alternating))
(1)
GC-(triple quadrupole)MS, TQ8040, Shimadzu
(1)
LECO Pegasus III, GCTOFMS
(1)
Liquid Chromatography MS - Positive (LC-MS (Positive))
(1)
Publication Date
2005
(151)
2024
(106)
2015
(60)
2010
(23)
2014
(18)
2013
(16)
2022
(15)
2012
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2016
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2011
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2017
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(12)
2018
(8)
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(7)
2009
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2007
(5)
2026
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2020
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2008
(3)
2006
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2019
(2)
UNIPROT ID/AC
P04075
(69)
A0PJJ9
(67)
A0PJK1
(67)
A0S0A7
(67)
A6NFM2
(67)
A8K3J4
(67)
A8K761
(67)
A8K7W0
(67)
A8MU28
(67)
B1AK53
(67)
B1AM93
(67)
B2R6S5
(67)
B2RB13
(67)
B2RD24
(67)
B3KNC1
(67)
B3KXN9
(67)
B4DG68
(67)
B4DIA3
(67)
B4DK61
(67)
B4DKS0
(67)
B4DUG1
(67)
B7Z1R0
(67)
B7Z3W8
(67)
B7Z4Y6
(67)
B7Z792
(67)
C9JT23
(67)
C9JZ62
(67)
D3DX95
(67)
D9HTE9
(67)
E5KNH5
(67)
ENSEMBL ID
ENSG00000064012
(4)
ENSG00000115415
(1)
ENSG00000139318
(1)
ENSG00000151468
(1)
ENSG00000168646
(1)
ENSG00000185338
(1)
ENSRNOP00000009359
(1)
CHEBI ID
CHEBI:15428
(118)
CHEBI:17295
(116)
CHEBI:18050
(116)
CHEBI:15603
(115)
CHEBI:16643
(115)
CHEBI:16828
(115)
CHEBI:17191
(115)
CHEBI:17895
(115)
CHEBI:16526
(112)
CHEBI:16761
(112)
CHEBI:15343
(111)
CHEBI:15414
(111)
CHEBI:15699
(111)
CHEBI:15971
(111)
CHEBI:16189
(111)
CHEBI:16349
(111)
CHEBI:16414
(111)
CHEBI:16680
(111)
CHEBI:16857
(111)
CHEBI:16977
(111)
CHEBI:17115
(111)
CHEBI:17196
(111)
CHEBI:17203
(111)
CHEBI:17561
(111)
CHEBI:18191
(111)
CHEBI:15379
(110)
CHEBI:16240
(110)
CHEBI:17544
(110)
CHEBI:11851
(109)
CHEBI:15440
(109)
Metabolite Name
L-Glutamine
(3)
L-Phenylalanine
(3)
L-leucine
(3)
Tryptophan
(3)
(R)-pantothenic acid
(2)
(S)-lactic acid
(2)
2-oxoglutaric acid
(2)
3-phospho-D-glyceric acid
(2)
5-oxo-L-proline
(2)
Arachidonic acid
(2)
Arginine
(2)
Asparagine
(2)
Azelaic acid
(2)
Citric acid
(2)
Fumaric acid
(2)
Glycine
(2)
Isoleucine
(2)
Kynurenine
(2)
L-Isoleucine
(2)
L-Tyrosine
(2)
L-alanine
(2)
L-asparagine
(2)
L-glutamine
(2)
L-histidine
(2)
L-isoleucine
(2)
L-ornithine
(2)
L-phenylalanine
(2)
L-proline
(2)
L-serine
(2)
L-threonine
(2)
First Public Date
2026
(1)
Modelling Approach
Ordinary differential equation model
(170)
Constraint-based model
(14)
Logical model
(2)
Metabolic network
(1)
Lab affiliation
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China
(2)
Department of Agricultural Chemistry, Edaphology and Microbiology, Microbiology area, Severo Ochoa building (C6), Agrifood Campus of International Excellence ceiA3, University of Córdoba, Córdoba, Spain
(1)
Department of Biochemistry, University of Cambridge
(1)
Department of Chemistry, the University of Hong Kong
(1)
Department of Immunology and Microbiology Institute of Biomedicine Sahlgrenska Academy University of Gothenburg
(1)
Department of Pediatrics Dr. von Hauner Children’s Hospital University Hospital LMU Munich Lindwurmstr. 4 80337 Munich, Germany
(1)
Division Systems Biology of Signal Transduction German Cancer Research Center (DKFZ)
(1)
German Cancer Research Center (DKFZ)
(1)
Institute of Biochemistry of Vilnius University, Vilnius, Lithuania
(1)
Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branisovska 1160/31, 37005 Ceske Budejovice, Czech Republic
(1)
Laboratoire d’Anthropologie Moléculaire et Imagerie de Synthèse (AMIS), Université de Toulouse, CNRS, UPS, Toulouse,France
(1)
Laboratory for Biological Mass Spectrometry, Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK
(1)
Ludwig-Maximilians-Universität München Protein Analysis Unit Molecular Biology Department Großhadernerstr. 9 82152 Planegg-Martinsried
(1)
M.V.Sc., PG Diploma in IPR, Master of IP Law, Ph.D, ARS Head, Southern Campus of ICAR-National Dairy Research Institute, Adugodi, Bangalore, India, 560030
(1)
Professor of Medical Epigenetics German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Zentrale Klinische Forschung (ZKF) University Medical Center Freiburg Breisacher Str. 66, 79106 Freiburg, Germany
(1)
Proteomics, Institute of Theoretical Medicine, University of Augsburg, 86159 Augsburg, Germany
(1)
Research Centre for Personalized Medicine, Almazov National Medical Research Centre, Saint Petersburg, Russia
(1)
School of Life Sciences, University of Dundee, Dundee
(1)
School of Life Sciences, University of Dundee, Dundee, UK
(1)
School of Life Sciences, University of Dundee, Dundee, UK(lab head)
(1)
Systems Biology of Signal Transduction, German Cancer Research Center Heidelberg, Germany
(1)
UK Dementia Research Institute Imperial College London
(1)
UMR 1297-I2MC, Inserm, Université de Toulouse, UPS , 31000Toulouse, France
(1)
University of Greifswald; Institute of Microbiology
(1)
University of Nebraska Medical Center
(1)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK
(1)
Volker Boehm Gehring Lab, Institute for Genetics, University of Cologne, 50674 Cologne, Germany
(1)
Zellidentitäten und Krankheitsmodellen German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 280 69120 Heidelberg
(1)
IsPrivate
False
(297)
Model Flag
Non Kinetic
(131)
Non Miriam
(5)
Submitter Keywords
Immuno-oncology
(3)
Modification
4x(2)H labeled dimethylated L-lysine
(2)
Study type
Transcription profiling by array
(88)
RNA-seq of coding RNA
(27)
ChIP-seq
(11)
RNA-seq of coding RNA from single cells
(8)
Methylation profiling by high throughput sequencing
(5)
RNA-seq of non coding RNA
(5)
Bisulfite-seq
(4)
Comparative genomic hybridization by array
(4)
Unknown experiment type
(2)
Genotyping by array
(2)
DNA-seq
(2)
Differential
(1)
Human - High-throughput sequencing
(1)
Animal - High-throughput sequencing
(1)
Trajectory
(1)
ChIP-chip by array
(1)
Spatial transcriptomics by high-throughput sequencing
(1)
Hi-C
(1)
MicroRNA profiling by array
(1)
Methylation profiling by array
(1)
Release Date
2025
(425)
2022
(409)
2023
(357)
2021
(343)
2024
(341)
2020
(238)
2019
(171)
2018
(155)
2017
(148)
2016
(112)
2015
(83)
2014
(67)
2026
(64)
2013
(57)
2012
(44)
2011
(43)
2010
(39)
2009
(23)
2007
(13)
2008
(10)
2005
(4)
2003
(4)
2006
(3)
2004
(2)
2002
(1)
1999
(1)
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Analysis of the gastric H,K ATPase for ion pathways and inhibitor binding sites.
Not available
S-EPMC2837483
|
biostudies-literature
Cite
An ion gating mechanism of gastric H,K-ATPase based on molecular dynamics simulations.
Not available
S-EPMC2527272
|
biostudies-literature
Cite
Development and validation of a Japanese translation of the K-SF-42.
Not available
S-EPMC9481016
|
biostudies-literature
Cite
Advances in the discovery of cathepsin K inhibitors on bone resorption.
Not available
S-EPMC6010086
|
biostudies-literature
Cite
Thermodynamic Properties of 3- and 4-Ethoxyacetanilides between 80 and 480 K.
Not available
S-EPMC10609036
|
biostudies-literature
Cite
Structure of the Mini-K-J and Its Utility for Measuring Fast Life History Traits in Japanese Undergraduate Students.
Not available
S-EPMC10303586
|
biostudies-literature
Cite
K-clique percolation in free association networks and the possible mechanism behind the [Formula: see text] law.
Not available
S-EPMC8975849
|
biostudies-literature
Cite
Diminishing return for increased Mappability with longer sequencing reads: implications of the k-mer distributions in the human genome.
Not available
S-EPMC3927684
|
biostudies-literature
Cite
Morphine drives internal ribosome entry site-mediated hnRNP K translation in neurons through opioid receptor-dependent signaling.
Not available
S-EPMC4245930
|
biostudies-literature
Cite
Fink2008_VentricularActionPotential
This a model from the article: Contributions of HERG K+ current to repolarization of the human ventricular action potential. Fink M, Noble D, Virag L, Varro A, Giles WR. Prog Biophys Mol Biol 2008 Jan-Apr;96(1-3):357-76 17919688 , ...
2005-01-01
|
MODEL1006230009
|
BioModels
Cite
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