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Unknown (5081)
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Transcriptomics (352)
Proteomics (103)
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Metabolomics (21)
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Organisms

Homo sapiens (399)
Mus musculus (118)
Saccharomyces cerevisiae (39)
Mammalia (38)
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Escherichia coli (13)
Arabidopsis thaliana (13)
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cellular organisms (9)
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Organisms

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Repository

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biostudies-arrayexpress (380)
pride (87)
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Tissue

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Disease

Alzheimer's disease (8)
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Technology Type

Mass Spectrometry (87)
Shotgun proteomics (43)
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Affinity purification coupled with mass spectrometry proteomics (16)
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Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
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Instrument Platform

Illumina NovaSeq 6000 (32)
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GenePix 4000A [Axon Instruments] (3)
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Performed by Novogene; Illumina library preparation instrumentation (provider standard) (1)
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Immunomagnetic separation system (e.g., Miltenyi MACS separator), Tissue culture facilities (biosafety cabinet, CO₂ incubator) , Bench centrifuge (1)
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None (1)
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- (1)
DNBSEQ-T7 (1)
HiSeq X Ten (1)
Illumina HiSeq X Ten, Illumina HiSeq 2000 (1)
Xevo G2-S QTof (1)

Publication Date

2024 (189)
2005 (158)
2015 (133)
2013 (41)
2010 (39)
2016 (33)
2022 (32)
2012 (32)
2021 (31)
2014 (31)
2023 (30)
2011 (26)
2020 (22)
2017 (20)
2019 (18)
2018 (18)
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2025 (17)
2008 (17)
2009 (12)
2007 (7)
2006 (4)
2003 (2)

UNIPROT ID/AC

Q00764 (16)
P31688 (16)
P33401 (16)
P37012 (16)
P32861 (16)
P24864 (13)
P24941 (10)
Q01094 (7)
Q02750 (7)
P42345 (6)
P06213 (6)
P25445 (5)
Q13158 (5)
P55957 (5)
P11802 (5)
Q14790 (5)
P06400 (5)
P08887 (5)
P04049 (5)
P05231 (5)
P23443 (5)
P35568 (5)
P31749 (5)
P27824 (4)
Q9U6Y8 (4)
P02741 (4)
P22434 (4)
P06776 (4)
P00549 (4)
P04806 (4)

ENSEMBL ID

ENSG00000064012 (4)
ENSRNOP00000009359 (1)

CHEBI ID

CHEBI:15422 (108)
CHEBI:16761 (104)
CHEBI:16027 (102)
CHEBI:18021 (95)
CHEBI:17754 (95)
CHEBI:16908 (94)
CHEBI:15846 (94)
CHEBI:16236 (92)
CHEBI:16001 (91)
CHEBI:16108 (91)
CHEBI:15343 (90)
CHEBI:17794 (90)
CHEBI:17835 (90)
CHEBI:29052 (89)
CHEBI:4167 (87)
CHEBI:15978 (85)
CHEBI:17659 (82)
CHEBI:18066 (82)
CHEBI:15428 (82)
CHEBI:16474 (79)
CHEBI:16077 (79)
CHEBI:15996 (77)
CHEBI:17552 (77)
CHEBI:15346 (76)
CHEBI:16240 (76)
CHEBI:16526 (76)
CHEBI:15351 (76)
CHEBI:15414 (75)
CHEBI:16551 (74)
CHEBI:18367 (74)

Metabolite Name

L-Glutamine (4)
L-Phenylalanine (4)
L-leucine (3)
Glycine (3)
Arachidonic acid (3)
Stearic acid (3)
Raffinose (3)
Palmitic acid (3)
Linoleic acid (3)
Xanthine (3)
Sucrose (3)
Tryptophan (3)
L-Isoleucine (3)
L-Tyrosine (3)
Stanozolol (2)
Octadecanoic acid (2)
(R)-pantothenic acid (2)
D-Fructose (2)
Sn-glycerol 3-phosphate (2)
D-Gluconic acid (2)
Cholesterol (2)
Phenol (2)
Hexadecanoic acid (2)
Oleic acid (2)
Beta-Alanine (2)
Urea (2)
Ethanolamine (2)
Citric acid (2)
Beta-alanine (2)
3-phospho-D-glyceric acid (2)

First Public Date

2025 (8)
2026 (1)
2016 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (300)
Constraint-based model (39)
Logical model (2)
Metabolic network (1)
Delayed differential equation model (1)

Study status

Completed (1)

Lab affiliation

German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Department of Urology Zentrale Klinische Forschung (ZKF) Medical Center-University of Freiburg Breisacher Str. 66, 79106 Freiburg, Germany (4)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (2)
Institute of Biochemistry, University of Kiel (2)
, IWE ZIK HALOmem, Martin Luther University Halle-Wittenberg, Halle,Germany (1)
1. German Cancer Consortium (DKTK) partner site Freiburg, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany 2. Department of Urology, Medical Center-University of Freiburg, 79106 Freiburg, Germany (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo and Instituto de Investigaciones Biológicas Clemente Estable (1)
Biomolecular Mass Spectrometry and Proteomics, Utrecht University, Utrecht, The Netherlands (1)
Boston Children's Hospital | Harvard Medical School (1)
CIC bioGUNE Proteomics Service Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (1)
Cannon Research Center, Mass Spectrometry Core Facility, Carolinas HealthCare System, United States. (1)
Center for Neuroscience and Cell Biology of theUniversity of Coimbra (1)
Chemistry of Michigan State University (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-University Bochum (1)
DKFZ, Germany (1)
Departament of Molecular Biologi and Biochemistry, Faculty of Sciences, University of Malaga, 29071 Malaga, Spain (1)
Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, Alberta, Canada (1)
Department of Biochemistry, University of Cambridge (1)
Department of Chemistry, Michigan State University (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI 48824, USA (1)
Department of Chemistry, the University of Hong Kong (1)
Department of Genetics, Cell Bioliogy, & Anatomy Buckley Lab University of Nebraska Medical Center Omaha, Nebraska United States of America (1)
Department of Immunology and Microbiology Institute of Biomedicine Sahlgrenska Academy University of Gothenburg (1)
Department of Infectious Diseases and Immunology, Emerging Pathogens Institute, University of Florida, United States of America (1)
Department of Large Animal Diseases and Clinic, Institute of Veterinary Medicine, Warsaw University of Life Sciences, Warsaw, Poland (1)
Department of Medical Biology, Faculty of Health Sciences, UiT The Arctic University of Norway, Tromsø, Norway (1)
Department of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, Spain. (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea. (1)

IsPrivate

False (431)

Model Flag

Non Kinetic (135)
Non Miriam (9)
Sbml Extended (1)

Submitter Keywords

Oncology (1)
FROG (1)

Modification

4x(2)H labeled dimethylated L-lysine (2)

Study type

Transcription profiling by array (194)
RNA-seq of coding RNA (57)
RNA-seq of coding RNA from single cells (24)
ChIP-seq (16)
Comparative genomic hybridization by array (11)
Unknown experiment type (9)
Methylation profiling by high throughput sequencing (7)
RNA-seq of non coding RNA (6)
Human - High-throughput sequencing (5)
Methylation profiling by array (5)
Proteomic profiling by array (5)
ChIP-chip by array (4)
Genotyping by array (4)
MicroRNA profiling by array (4)
Cell line - High-throughput sequencing (3)
Bisulfite-seq (3)
DNA-seq (3)
RNA-seq of total RNA (3)
Human - Single-cell sequencing (2)
Spatial transcriptomics by high-throughput sequencing (2)
ATAC-seq (2)
Hi-C (2)
ScATAC-seq (2)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Trajectory (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)

Release Date

2025 (706)
2022 (700)
2023 (646)
2024 (590)
2021 (575)
2020 (411)
2019 (326)
2018 (250)
2017 (232)
2016 (199)
2015 (163)
2014 (138)
2026 (109)
2013 (85)
2012 (77)
2010 (75)
2011 (61)
2009 (43)
2008 (28)
2006 (15)
2007 (12)
2005 (8)
2003 (6)
2004 (2)
2002 (2)
2000 (1)
1999 (1)

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Barr2016 - All-or-nothing G1/S transition

Barr2016 - All-or-nothing G1/S transition This model is described in the article: A Dynamical Framework for the All-or-None G1/S Transition. Barr AR, Heldt FS, Zhang T, Bakal C, Novák B. Cell Syst 2016 Jan; 2(1): 27-37 Abstract: The transition from G1 into DNA replica...

2024-09-02 | BIOMD0000000646 | BioModels

Lawsuit frequency and claims basis over lost, damaged, and destroyed frozen embryos over a 10-year period.

Not available

S-EPMC8244326 | biostudies-literature

GNPS 42 New psychoactive substances investigated on Q-Exactive and Xevo G2-S QTOF

42 new psychoactive substances originating from law enforcement seizures were investigated on Q exactive (data dependent acquisition) and QTOF (data independent acquisition).

ORGANISM(S): Law Enforcement Seizures, Powder

2020-10-14 | MSV000086280 | GNPS

Heritable human genome editing and the politics of law: the South African case study.

Not available

S-EPMC12722161 | biostudies-literature

Mindful Lawyering: a Pilot Study on Mindfulness Training for Law Students.

Not available

S-EPMC9388961 | biostudies-literature

Microbially Derived P=S and P=Se Bond Formation.

Not available

S-EPMC12042036 | biostudies-literature

Swat2004_Mammalian_G1_S_Transition

This is the extended model described the article: Bifurcation analysis of the regulatory modules of the mammalian G1/S transition. Swat M, Kel A, Herzel H. Bioinformatics 2004 Jul 10;20(10):1506-11. PMID: 15231543 , doi: ...

2024-09-02 | BIOMD0000000228 | BioModels

Impact of teaching, learning, and assessment of medical law on cognitive, affective and psychomotor skills of medical students: a systematic review.

Not available

S-EPMC10523676 | biostudies-literature

A Novel Approach to Characterize the Lipidome of Marine Archaeon Nitrosopumilus maritimus by Ion Mobility Mass Spectrometry

Archaea are differentiated from the other two domains of life by their biomolecular characteristics. One such characteristic is the unique structure and composition of their lipids. Characterization of the whole set of lipids in a biological system (the lipidome) remains technologically challengi...

2021-12-16 | MTBLS3714 | MetaboLights

Kollarovic2016 - Cell fate decision at G1-S transition

Kollarovic2016 - Cell fate decision at G1-S transition This model is described in the article: To senesce or not to senesce: how primary human fibroblasts decide their cell fate after DNA damage. Kollarovic G, Studencka M, Ivanova L, Lauenstein C, Heinze K, Lapytsko A, Talem...

2024-09-02 | BIOMD0000000632 | BioModels

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