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Bacillus subtilis subsp. subtilis str. 168 (24)
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Acinetobacter baumannii AB5075 (6)
Shewanella oneidensis MR-1 (6)
Salmonella enterica subsp. enterica serovar Typhimurium (6)
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Instrument Platform

NextSeq 500 (31)
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Publication Date

2012 (92)
2010 (90)
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CHEBI ID

CHEBI:16335 (20)
CHEBI:17568 (19)
CHEBI:16027 (19)
CHEBI:15603 (19)
CHEBI:16708 (18)
CHEBI:15428 (17)
CHEBI:17053 (17)
CHEBI:16015 (17)
CHEBI:15756 (17)
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CHEBI:16865 (14)
CHEBI:18050 (14)
CHEBI:16414 (14)
CHEBI:17191 (14)
CHEBI:17295 (14)
CHEBI:16695 (13)
CHEBI:17154 (13)

Metabolite Name

Adenosine (17)
Adenine (17)
Hypoxanthine (15)
Uracil (14)
L-Phenylalanine (14)
L-Tryptophan (13)
Guanosine (13)
Inosine (13)
Thymine (12)
Uridine (12)
Ornithine (11)
L-Methionine (11)
L-Tyrosine (11)
Cytosine (10)
L-Glutamine (10)
Cytidine (10)
L-Leucine (10)
L-Alanine (9)
L-Proline (9)
L-Arginine (9)
Succinate (9)
Xanthine (9)
Glycine (8)
Valine (8)
Lumichrome (8)
L-Asparagine (8)
L-Histidine (8)
Methionine (8)
Spermidine (8)
Guanine (8)

First Public Date

2026 (188)
2014 (123)
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2025 (44)
2019 (34)
2022 (32)
2023 (29)
2020 (26)
2021 (24)
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2015 (16)
2013 (16)
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Modelling Approach

Constraint-based model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (12)
University of Warwick (8)
EDyP (6)
Michigan State University (3)
Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST), Hong Kong (2)
Computational Systems Biochemistry Research Group, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (2)
Department of Chemistry and Biochemistry University of Colorado, Boulder Boulder, CO 80309 (2)
Department of Molecular Pathology and Biology Faculty of Military Health Sciences, University of Defence Trebesska 1575, 50001 Hradec Kralove, Czech Republic (2)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (2)
Key Laboratory of Rare and Uncommon Diseases, Department of Microbiology, Institute of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences (2)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (2)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (2)
University of Louisville, Department of Chemistry, Louisville, KY 40208, USA (2)
1. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2. Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH93BF, United Kingdom (1)
1. School of Biological Sciences, National Institute of Science Education and Research, Bhubaneswar – 752050, India 2. Homi Bhabha National Institutes (HBNI), Training School Complex, Anushakti Nagar, Mumbai, India 400094 (1)
1Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands (1)
1Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium (1)
5Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (1)
Aix Marseille Univ, CNRS, FR3479, Proteomics facility of IMM, Marseille Protéomique (1)
Aix-Marseille Univ, CNRS,FR3479, Proteomics facility of Institut de Microbiologie de la Mediterranee, Marseille Proteomique, Marseille, France (1)
Anders H. Lund Professor, PhD Biotech Research and Innovation Centre University of Copenhagen Ole Maaloes Vej 5 DK-2200 N Copenhagen Denmark (1)
Associate professor, department of Biology. University of Rochester,NY, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, USA ( lab head ) (1)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (1)
BIOCEV, 1st Faculty of Medicine, Prague (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
Biologie der Mikroorganismen Ruhr-Universität Bochum (1)
Bioorganic Analytics, Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Gemany (1)
CECAD, University of Cologne, AG Krüger (1)
CNRS, UMR7242, UMR7242, ESBS, Bld Sébastien Brant, F-67412 Illkirch, Strasbourg, France (1)

IsPrivate

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Submitter Keywords

FROG (1)

Classification

bacteria (277)

Modification

Not available (1)

Study type

Transcription profiling by array (404)
RNA-seq of coding RNA (110)
ChIP-seq (25)
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DNA-seq (16)
ChIP-chip by tiling array (14)
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Other (12)
Comparative genomic hybridization by array (10)
Unknown experiment type (9)
High-throughput sequencing (6)
Methylation profiling by array (3)
Genotyping by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
RIP-seq (2)
Two-color microarray (1)
One-color microarray (1)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
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Gene Expression profiles of E.coli grown in LB and Minimal medium

Gene Expression profiles of E.coli grown in LB and Minimal medium (DM) at OD 600 =1

ORGANISM(S): Escherichia coli

2010-06-10 | E-GEOD-1981 | biostudies-arrayexpress

Minimal vs LB media comparison

The type of bacterial culture medium is an important consideration during design of any experimental protocol. The aim of this study was to understand the impact of medium choice on bacterial gene expression and physiology by comparing the transcriptome of Salmonella enterica SL1344 after growth in ...

ORGANISM(S): Salmonella enterica

2014-07-31 | E-MTAB-1135 | biostudies-arrayexpress

Listeria monocytogenes EGD after growth BHI vs. LB vs. MM

Transcriptional profile of prfA, the dependent genes and the PTS genes after growth in BHI (brain-heart-infusion), LB (Luria Bertani broth) and MM (minimal medium (Premaratne et al. 2001) (each supplemented with 50 mM Glucose). Keywords: media comparison A total of three independently isolated RNA...

ORGANISM(S): Listeria monocytogenes

2008-11-30 | E-GEOD-12143 | biostudies-arrayexpress

Modulation of PrfA activity in Listeria monocytogenes upon growth in different culture media

PrfA activity was studied in L. monocytogenes strain EGD and in an isogenic prfA deletion mutant (EGDΔprfA) carrying multiple copies of the wild-type prfA or the mutant prfA* gene (strains EGDΔprfApPrfA and EGDΔprfApPrfA*) after growth in brain heart infusion (BHI), Luria-Bertani broth (LB) or a def...

ORGANISM(S): Listeria monocytogenes

2008-11-30 | E-GEOD-12151 | biostudies-arrayexpress

Time course of manganese treatment in LB

The SOS response to DNA damage in bacteria is a well-known component of the complex transcriptional responses to genotoxic environmental stresses such as exposure to reactive oxygen species, alkylating agents, and many of the antibiotics targeting DNA replication. However, bacteria such as Bacillus ...

ORGANISM(S): Bacillus subtilis

2010-06-12 | E-GEOD-22296 | biostudies-arrayexpress

Gene Expression profiles of E.coli grown in LB and Minimal medium

Gene Expression profiles of E.coli grown in LB and Minimal medium (DM) at OD 600 =1 Keywords: ordered

ORGANISM(S): Escherichia coli

2005-02-28 | GSE1981 | GEO

SigX ECF sigma factor deletion mutant expression profile in Pseudomonas aeruginosa H103 in LB medium

PRJNA482114 | ENA

RNA-seq of Klebsiella pneumoniae SGH10 grown in LB or DMEM medium

PRJEB65971 | ENA

RIL-seq of Klebsiella pneumoniae SGH10 grown in LB or DMEM medium

PRJEB65980 | ENA

P. aeruginosa PA14 WT in LB medium vs in LB with 10 mM adenosine medium

To investigate the impact of adenosine on gene expression of wild-type PA14. To investigate the impact of adenosine on gene expression of wild-type PA14, cells were harvested after incubating for 7 h in LB medium and LB with 10 mM adenosine medium, and RNA was extracted with the RNeasy Mini Kit (Qia...

ORGANISM(S): Pseudomonas aeruginosa

2012-05-22 | E-GEOD-29665 | biostudies-arrayexpress

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