Lc-mc - OmicsDI

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Unknown (1393)
Proteomics (144)
Metabolomics (54)
Genomics (17)
Transcriptomics (16)

Organisms

Bombyx mori (125)
Schizosaccharomyces pombe (125)
Human immunodeficiency virus 1 (125)
Oryza sativa Indica Group (125)
Sinorhizobium meliloti BL225C (125)
Sus scrofa domesticus (125)
Ostreococcus tauri (125)
Saccharomyces cerevisiae (125)
Vitis vinifera (125)
Staphylococcus aureus (125)
Rattus norvegicus (125)
Escherichia coli (125)
Candida albicans (125)
Cyanophora paradoxa (125)
Bursaphelenchus xylophilus (125)
Pseudomonas aeruginosa SJTD-1 (125)
Rhizobium sp. Leaf68 (125)
Canis lupus familiaris (125)
Camelus dromedarius (125)
Entamoeba histolytica (125)
Physcomitrium patens (125)
Methylohalobius crimeensis 10Ki (125)
Homo sapiens (15)
Mus musculus (4)
Klebsiella pneumoniae (1)
Bos taurus (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Mycolicibacterium smegmatis MC2 155 (1)
Mycobacterium tuberculosis (1)

Organisms

Homo sapiens (3)
Mus musculus (2)

Repository

pride (125)
MetaboLights (54)
biostudies-arrayexpress (12)
MassIVE (12)
ENA (12)
geo (5)
EGA (4)
PAXDB (3)
jPOST (2)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (34)
Brain (14)
Liver (6)
Early embryonic cell (4)
Blood plasma (4)
Permanent cell line cell (4)
Epithelial cell (4)
Plant cell (3)
Lung (3)
B cell (3)
Colon (3)
Animal cap (2)
White adipose tissue (2)
Shoot (2)
Skin (2)
Leukocyte (2)
Macrophage (2)
Skeletal muscle (2)
Root (2)
HeLa cell (2)
Testis (2)
Whole body (2)
Primary cell (2)
Hepatocyte (2)
Neutrophil (2)
T cell (2)
Blood (2)
Kidney glomerular epithelial cell (1)
Neck (1)
Thallus (1)

Disease

Alzheimer's disease (2)
COVID-19 (2)
Disease free (2)
Acute leukemia (2)
Neurodevelopmental delay (1)
Periventricular nodular heterotopia (1)
Polycystic kidney disease (1)
Non-Hodgkin lymphoma (1)
Spinal cord (1)
Diffuse large B-cell lymphoma activated B-cell type (1)
Head and neck cancer (1)
Lung small cell carcinoma (1)
Non-small cell lung carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Chronic myeloid leukemia (1)
Pancreatic cancer (1)
Brain cancer (1)
Tuberculosis (1)
Male infertility (1)
Breast cancer (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (125)
Shotgun proteomics (70)
Mass spectrometry (46)
Bottom-up proteomics (27)
Data-dependent acquisition (19)
Affinity purification coupled with mass spectrometry proteomics (17)
Mass spectrometry assay (7)
SRM/MRM (5)
Data-independent acquisition (4)
NMR spectroscopy (3)
Gel-based experiment (3)
Top-down proteomics (3)
Affinity proteomics (2)
MSE (2)
Metaproteomics (1)
Proteogenomics (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)
All-ion fragmentation (1)
DiaPASEF (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (20)
Liquid Chromatography MS - negative - reverse phase (17)
TSQ Vantage (Thermo Scientific) (8)
Thermo Scientific LTQ FT Ultra (5)
Liquid Chromatography MS - alternating - reverse phase (4)
Liquid Chromatography MS - negative - hilic (4)
Orbitrap Fusion Lumos (3)
MaXis (Bruker) (3)
Nuclear Magnetic Resonance (NMR) - (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina HiSeq 4000 (2)
Orbitrap Fusion (2)
Q Exactive Plus (2)
7T LTQ FT Ultra, Thermo Fisher Scientific (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - alternating - hilic (2)
TimsTOF HT (1)
LTQ XL (1)
QExactive (1)
Q Exactive (1)
LTQ Orbitrap (1)
Q Exactive HF-X (1)
QTRAP 6500 (Applied Biosystems) (1)
QTRAP 5500 (Applied Biosystems) (1)
Xevo TQ MS (1)
TSQ Quantum Access MAX (Thermo Scientific) (1)
QqTOF Compact (Bruker) (1)
Liquid Chromatography MS – negative - reverse phase (1)
LTQ FT Ultra (Thermo Scientific) (1)
Direct infusion MS - negative (1)

Publication Date

2024 (31)
2022 (26)
2021 (24)
2023 (20)
2026 (19)
2025 (16)
2019 (13)
2016 (13)
2020 (12)
2017 (10)
2015 (8)
2018 (8)
2014 (5)
2012 (3)
2013 (2)
2010 (2)
2008 (1)
2007 (1)

UNIPROT ID/AC

A0QXZ5_MYCS2 (2)
A0QP78_MYCS2 (2)
A0R0V8_MYCS2 (2)
A0R178_MYCS2 (2)
A0QY12_MYCS2 (2)
RBFA_MYCS2 (2)
A0QQD1_MYCS2 (2)
A0QYE8_MYCS2 (2)
246196.MSMEI_0784 (2)
A0R2N4_MYCS2 (2)
A0QTL2_MYCS2 (2)
A0QZA6_MYCS2 (2)
A0QSZ7_MYCS2 (2)
PSA_MYCS2 (2)
A0QUH1_MYCS2 (2)
A0QPR6_MYCS2 (2)
A0QQX7_MYCS2 (2)
A0QT14_MYCS2 (2)
INHA_MYCS2 (2)
A0R4P4_MYCS2 (2)
A0QYV3_MYCS2 (2)
A0R1H3_MYCS2 (2)
A0QNZ9_MYCS2 (2)
A0R2D2_MYCS2 (2)
A0R5B0_MYCS2 (2)
A0QQD2_MYCS2 (2)
Y3950_MYCS2 (2)
A0R1R7_MYCS2 (2)
A0R237_MYCS2 (2)
A0QYE9_MYCS2 (2)

CHEBI ID

CHEBI:28044 (18)
CHEBI:16335 (16)
CHEBI:27897 (16)
CHEBI:17596 (16)
CHEBI:17509 (15)
CHEBI:25017 (14)
CHEBI:17015 (14)
CHEBI:7916 (14)
CHEBI:29016 (14)
CHEBI:26271 (13)
CHEBI:28300 (13)
CHEBI:16750 (13)
CHEBI:15741 (13)
CHEBI:16856 (12)
CHEBI:18237 (12)
CHEBI:22660 (12)
CHEBI:16811 (12)
CHEBI:30753 (12)
CHEBI:30763 (12)
CHEBI:16691 (11)
CHEBI:18186 (11)
CHEBI:18257 (11)
CHEBI:17533 (11)
CHEBI:24898 (11)
CHEBI:6650 (11)
CHEBI:28683 (11)
CHEBI:18211 (11)
CHEBI:27732 (11)
CHEBI:15354 (11)
CHEBI:30769 (11)

Metabolite Name

Inosine (7)
Guanosine (7)
Tryptophan (6)
Xanthine (6)
4-hydroxybenzoic acid (6)
Chitotriose (5)
Pantothenic acid (5)
Aspartic acid (5)
2,3-dihydroxypropane-1-sulfonate (5)
Xanthosine (5)
Adenine (5)
Phenylalanine (5)
Isoleucine (5)
Leucine (5)
L-Alanine (5)
L-Valine (5)
Syringic acid (4)
Riboflavin (4)
2,3-dihydroxybenzoic acid (4)
Proline (4)
Kynurenine (4)
Guanine (4)
Arginine (4)
Choline (4)
Glutamine (4)
Ornithine (4)
Adenosine (4)
Succinic acid (4)
Uracil (4)
Pantothenic acid (4)

First Public Date

2026 (2)
2024 (2)
2021 (2)
2019 (2)
2022 (1)
2020 (1)
2017 (1)
2016 (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (174)
2023 (150)
2022 (149)
2025 (138)
2024 (133)
2020 (109)
2018 (76)
2019 (70)
2016 (66)
2017 (61)
2015 (55)
2014 (41)
2013 (30)
2010 (30)
2026 (26)
2011 (24)
2012 (23)
2008 (20)
2009 (9)
2007 (8)
2006 (4)
2004 (3)
2005 (2)
2003 (1)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (4)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology / Hans Knöll Institute Jena (Leibniz-HKI), Jena, Germany (3)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (3)
University of Oxford (3)
Harvard Medical School (3)
Shenzhen Center for Disease Control and Prevention (2)
State Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (2)
Hebei Key Laboratory of Metabolic Diseases (2)
Centre for Functional Protein Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, D-85748 Garching, Germany. (1)
UCL - de Duve Institute Brussels Belgium (1)
Peter Lasch, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (1)
National Key Laboratory of Medical Molecular Biology and Department of Immunology; Institute of Basic Medical Sciences; Chinese Academy of Medical Sciences (1)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, Shenzhen 518055, China. (1)
State Key Laboratory of Quality Research in Chinese Medicine and Institute of Chinese Medical Sciences, University of Macau, Macau (1)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Professor at UINCAMP-BR Campinas State University - São Paulo - Brazil (1)
Head of Laboratory of Neuro-Oncology Clinical & Cancer Proteomics the Netherlands (1)
Stress- and Immunoproteomics Group, Molecular and Applied Microbiology Department, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena (1)
Chemical Physiology and Biochemistry Oregon Health and Science University Portland, OR 97239 USA (1)
TU Munich, Department of Chemistry Lichtenbergstr. 4 Garching, DE 85747 (1)
Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa, 7925 (1)
Department of Integration of Chinese and Western Medicine, School of Basic Medical Sciences, Peking University, 38 Xueyuan Road, Beijing 100191, People’s Republic of China (1)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India (1)
University of Oxford; University of Utrecht (1)
Institute of Systems, Molecular and Integrative Biology University of Liverpool Liverpool L69 7ZB UK (1)
Protein Analysis Unit ZfP LMU Munich BioMedical Center Grosshaderner Strasse 9 82152 Planegg-Martinsried Tel. +49 89 2180 75420 (1)
Department of Gastroenterology, Hepatology and Clinical Oncology, Medical Center for Postgraduate Education; Warsaw, Poland Department of Genetics, Maria Sklodowska-Curie Memorial Cancer Center and Institute of Oncology; Warsaw, Poland (1)
Florida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL 34987, USA (1)
Department of Medical Biochemistry and Biophysics, Umeå University, Umeå, Sweden (1)

Tags

xref:PubMed:41442229 (1)
xref:PubMed:29151137 (1)
xref:PubMed:31242205 (1)
xref:PubMed:38995006 (1)
xref:PubMed:34471141 (1)
xref:PubMed:29029477 (1)
xref:PubMed:33765440 (1)

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Three-dimensional Laparoscopy (3D-LC) Versus Minilaparotomy (MC) in Cholecystectomy: A Prospective Randomized Study.

Not available

S-EPMC9677764 | biostudies-literature

Nonpeptidergic MrgprD-expressing neurons maintain cutaneous homeostasis via glutamate-mediated mast cell suppression

Cutaneous mast cells (MC) mediate numerous skin inflammatory processes and have anatomical and functional associations with sensory afferent neurons. We found that Langerhans cell (LC)-deficient mice have reduced numbers of MrgprD-expressing epidermal nerve endings and manifest enhanced irritant der...

ORGANISM(S): Mus musculus

2021-03-23 | GSE165295 | GEO

Improvement of immune dysregulation and health-related quality of life in individuals with long COVID at 24-months following SARS-CoV-2 infection

This study investigated the humoral and cellular immune responses in individuals with long COVID (LC) compared to age and gender matched recovered COVID-19 controls (MC) over 24-months. LC participants showed elevated spike and nucleocapsid IgG levels, higher neutralizing capacity, and increased spi...

ORGANISM(S): Homo sapiens

2024-04-04 | GSE262861 | GEO

DISTINCTIVE MOLECULAR SIGNATURE AND STRUCTURAL ALTERATIONS OF THE COLONIC BRUSH BORDER IN MICROSCOPIC COLITIS

BACKGROUND: Collagenous colitis (CC) and lymphocytic colitis (LC) are chronic inflammatory diseases of the colon of unknown etiology. We aimed to explore the underlying mechanisms of the colonic barrier dysfunction in MC by analysing the molecular pathways involved in the colonic epithelial brush bo...

ORGANISM(S): Homo sapiens

2026-01-14 | GSE282696 | GEO

Prognostic Significance and Molecular Features of Colorectal Mucinous Adenocarcinomas: A Strobe-Compliant Study.

Not available

S-EPMC4697997 | biostudies-literature

Epidemiology and Clinical Outcomes of Microscopic Colitis: Preliminary Results From the Loyola University Microscopic Colitis Registry (LUMiCoR).

Not available

S-EPMC8493955 | biostudies-literature

Improved functional properties of meat analogs by laccase catalyzed protein and pectin crosslinks.

Not available

S-EPMC8370993 | biostudies-literature

Patients With Microscopic Colitis Have Altered Levels of Inhibitory and Stimulatory Biomarkers in Colon Biopsies and Sera Compared to Non-inflamed Controls.