Lee J W JW - OmicsDI

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Unknown (1052)
Genomics (31)
Proteomics (17)
Transcriptomics (14)
Metabolomics (1)

Organisms

Homo sapiens (37)
Bombyx mori (13)
Schizosaccharomyces pombe (13)
Human immunodeficiency virus 1 (13)
Oryza sativa Indica Group (13)
Sinorhizobium meliloti BL225C (13)
Sus scrofa domesticus (13)
Ostreococcus tauri (13)
Saccharomyces cerevisiae (13)
Synechocystis sp. PCC 6803 (13)
Vitis vinifera (13)
Staphylococcus aureus (13)
Rattus norvegicus (13)
Escherichia coli (13)
Candida albicans (13)
Cyanophora paradoxa (13)
Bursaphelenchus xylophilus (13)
Pseudomonas aeruginosa SJTD-1 (13)
Rhizobium sp. Leaf68 (13)
Canis lupus familiaris (13)
Camelus dromedarius (13)
Entamoeba histolytica (13)
Physcomitrium patens (13)
Mus musculus (3)
Ovis aries (2)
Equus caballus (1)
Caenorhabditis elegans (1)
Sus scrofa (1)
Pseudomonas putida KT2440 (1)
Saccharomyces cerevisiae (1)

Organisms

Homo sapiens (1)

Repository

EGA (28)
biostudies-arrayexpress (15)
pride (13)
PanoramaPublic (2)
geo (1)
jPOST (1)
MassIVE (1)
MetaboLights (1)
ENA (1)

Tissue

Leaf (2)
Cell culture (2)
Esophageal squamous epithelium (1)
Seed (1)
Blood plasma (1)
Epithelial cell (1)
Kidney (1)
Liver (1)

Disease

Esophageal cancer (1)
Huntington Disease (1)

Technology Type

Mass Spectrometry (13)
Shotgun proteomics (6)
SWATH MS (2)
Bottom-up proteomics (2)
Illumina HiSeq 2500 (1)
Life Tech - Solid (1)
Illumina HiSeq 2000 (1)
Mass spectrometry (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)
SLIM TWIMS-MS coupled with Agilent 6224 TOF (1)
RapidFire 365 coupled with Agilent 6560 Ion Mobility QTOF (1)
Exactive (Thermo Scientific) (1)

Publication Date

2014 (5)
2013 (5)
2020 (4)
2010 (3)
2025 (3)
2021 (3)
2009 (2)
2023 (2)
2026 (2)
2004 (1)
2016 (1)
2024 (1)
2022 (1)
2019 (1)

CHEBI ID

CHEBI:132192 (1)
CHEBI:90140 (1)
CHEBI:132185 (1)
CHEBI:132184 (1)
CHEBI:132177 (1)
CHEBI:62805 (1)
CHEBI:131420 (1)
CHEBI:111510 (1)
CHEBI:132176 (1)
CHEBI:78002 (1)
CHEBI:132187 (1)
CHEBI:132194 (1)
CHEBI:39922 (1)
CHEBI:26675 (1)
CHEBI:43619 (1)
CHEBI:4139 (1)
CHEBI:86348 (1)
CHEBI:32927 (1)
CHEBI:28061 (1)
CHEBI:38264 (1)
CHEBI:35998 (1)
CHEBI:28897 (1)
CHEBI:18367 (1)
CHEBI:34856 (1)
CHEBI:4208 (1)
CHEBI:22599 (1)
CHEBI:14336 (1)
CHEBI:19475 (1)
CHEBI:87440 (1)
CHEBI:30887 (1)

Metabolite Name

1H-Indole, 1-(trimethylsilyl)-3-[2-[(trimethylsilyl)oxy]ethyl]- (1)
N,N-bis [2-Trimethylsiloxyethyl] ethanamine (1)
Beta-D-Galactopyranoside, methyl 2,3-bis-O-(trimethylsilyl)-, diacetate (1)
1-Cyclohexene-1-carboxylic acid, 3,4,5-tris[(trimethylsilyl)oxy]-, trimethylsilyl ester, [3R-(3alpha,4alpha,5beta)]- (1)
Myo-Inositol, 1,2,3,4,5,6-hexakis-O-(trimethylsilyl)- (1)
2-Naphthyl-beta-D-galactopyranoside (1)
D-Erythrotetrofuranose, tris-O-(trimethylsilyl)- (1)
Galactopyranose, 1,2,3,4,6-pentakis-O-(trimethylsilyl)-, beta-d- (1)
D-Galactose, 2,3,4,5,6-pentakis-O-(trimethylsilyl)- (1)
1-Butanone, 2-chloro-3-methyl-1-[4-(1-methylethyl)phenyl]- (1)
N,O-Bis-(trimethylsilyl)isoleucine (1)
Propanoic acid, 2-methyl-2-[(trimethylsilyl)oxy]-, trimethylsilyl ester (1)
Benzeneethanamine, N,alpha-dimethyl-beta-[(trimethylsilyl)oxy]- (1)
Hexane, 3,3-dimethyl- (1)
2-Butenoic acid, 3-methyl-2-[(trimethylsilyl)oxy]-, trimethylsilyl ester (1)
N,O-Bis-(trimethylsilyl)-2-pyrrolidone carboxylic acid (1)
2-Piperidinecarboxylic acid, 1-(trimethylsilyl)-, trimethylsilyl ester (1)
L-Leucine, N-(trimethylsilyl)-, trimethylsilyl ester (1)
Alpha-D-Mannopyranose, 1,2,3,4,6-pentakis-O-(trimethylsilyl)- (1)
Silanamine, N-[2-[3,4-bis[(trimethylsilyl)oxy]phenyl]ethyl]-1,1,1-trimethyl-N-(trimethylsilyl)- (1)
Phosphoric acid, bis(trimethylsilyl) 2,3-bis[(trimethylsilyl)oxy]propyl ester (1)
L-Aspartic acid, N-(trimethylsilyl)-, bis(trimethylsilyl) ester (1)
Butanoic acid, 2,4-bis[(trimethylsilyl)oxy]-, trimethylsilyl ester (1)
Glycine d5 (1)
L-Isoleucine, N-(trimethylsilyl)-, trimethylsilyl ester (1)
Silanamine, 1,1,1-trimethyl-N-(trimethylsilyl)-N-[2-[(trimethylsilyl)oxy]ethyl]- (1)
Pyridine, 3-trimethylsiloxy- (1)
Trisiloxane, 1,1,1,5,5,5-hexamethyl-3,3-bis[(trimethylsilyl)oxy]- (1)
4-(Trimethylsilyl)morpholine (1)
Pyridine, 3-methyl- (1)

First Public Date

2014 (1)

Study type

Unknown experiment type (4)
Transcription profiling by array (4)
RNA-seq of coding RNA (2)
Transcription profiling by SAGE (1)
Other (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (101)
2020 (100)
2023 (98)
2025 (97)
2024 (95)
2021 (94)
2018 (83)
2019 (69)
2014 (53)
2017 (53)
2015 (51)
2016 (44)
2013 (27)
2011 (24)
2012 (23)
2026 (19)
2010 (14)
2009 (13)
2008 (7)
2004 (1)
2007 (1)

Lab affiliation

Univeristy of California, San Francisco (1)
1. Department of Chemistry, Korea University, Seoul 02841, Republic of Korea 2. Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea (1)
Brigham and Women's Hospital Boston, MA 02115, USA (1)
Kyung Hee University (1)
Department of Plant Bioscience, Pusan National University, Miryang 50463, South Korea (1)
University of Cologne, Germany (1)
Michael Smith Laboratories, University of British Columbia, Canada (1)
School of Pharmacy, Sungkyunkwan University, Suwon 16419, Republic of Korea (1)
Cell Biology, Harvard Medical School (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (1)
Department of Plant Bioscience, Life and industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)

Tags

xref:PubMed:23922758 (1)

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Expression analysis of neural progenitor cells derived from iPS cells generated from skin fibroblasts and umbilical cord mesenchymal cells

Investigation of whole genome gene expression level changes in neural progenitor cells derived from iPS cells generated from umbilical cord mesenchymal cells, compared to neural progenitor cells derived from iPS cells generated fromskin fibroblasts. Analyze the difference between neural progenitor c...

ORGANISM(S): Homo sapiens

2013-05-06 | GSE46647 | GEO

Expression analysis of neural progenitor cells derived from iPS cells generated from skin fibroblasts and umbilical cord mesenchymal cells

ORGANISM(S): Homo sapiens

2013-05-06 | E-GEOD-46647 | biostudies-arrayexpress

Liver disease-associated keratin 8 and 18 mutations modulate keratin acetylation and methylation.

Not available

S-EPMC6988862 | biostudies-literature

Association of Cardiometabolic Genes with Arsenic Metabolism Biomarkers in American Indian Communities: The Strong Heart Family Study (SHFS).

Not available

S-EPMC5226702 | biostudies-literature

Subcortical volumetric alterations as potential predictors of methylphenidate treatment response in youth with attention-deficit/hyperactivity disorder.

Not available

S-EPMC8842691 | biostudies-literature

Extracellular RNAs in periodontopathogenic outer membrane vesicles promote TNF-α production in human macrophages and cross the blood-brain barrier in mice.

Not available

S-EPMC6894046 | biostudies-literature

mTORC1 as a cell-intrinsic rheostat that shapes development, preimmune repertoire, and function of B lymphocytes.

Not available

S-EPMC6894075 | biostudies-literature

Cytochrome bc1-cy fusion complexes reveal the distance constraints for functional electron transfer between photosynthesis components.

Not available

S-EPMC2376229 | biostudies-literature

Dnj4HA AP-MS in Cryptococcus neoformans

Proteins which act as histone chaperones ensure genomic integrity during routine processes such as DNA replication and transcription as well as DNA repair upon damage. Herein, we identify a nuclear J domain protein, Dnj4, which interacts with histones 3 and 4 as well as Hsp71 as demonstrated in an A...

ORGANISM(S): Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) (Filobasidiella neoformans var. grubii)

2021-12-15 | PXD028087 | Pride

Changes in socio-economic patterns of energy consumption and insufficient energy intake across India from 1993-94 to 2011-12.

Not available

S-EPMC10200476 | biostudies-literature

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1115 Results

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