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TranscriptomicsThe effect of IAN on P. aeruginosa virulence
Intercellular signal indole and its derivative hydroxyindoles inhibit Escherichia coli biofilm and diminish Pseudomonas aeruginosa virulence. However, indole and bacterial indole derivatives were unstable in microbial community due to the widespread of diverse oxygenases that could quickly degrade ...
ORGANISM(S): Pseudomonas aeruginosa 
2011-02-20 | E-GEOD-21508 | biostudies-arrayexpress
TranscriptomicsP. aeruginosa and indole and 7-hydroxyindole
We used DNA microarrays to investigate the impact of indole and 7-hdroxyindole on P. aeruginosa PAO1.For the microarray experiments, 10 g glass wool (Corning Glass Works, Corning, N.Y.) were used to form biofilms in 250 mL in 1 L Erlenmeyer shake flasks which were inoculated with overnight cultures ...
ORGANISM(S): Pseudomonas aeruginosa PAO1 
2010-10-23 | E-GEOD-10065 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling of human anaplastic meningioma IOMM-Lee cells following silencing of HuR (Human antigen R) gene expression by siRNA
The human anaplastic meningioma IOMM-Lee cells were cultured in Dulbecco’s modified Eagle’s medium (Life Technologies, Carlsbad, California, USA) supplemented with 10% fetal bovine serum, 100 U/ml penicillin, and 100 mg/ml streptomycin, at 37°C in 20% O2 (5% CO2). HuR silencing was achieved by ...
ORGANISM(S): Homo sapiens 
2017-07-01 | E-MTAB-4999 | biostudies-arrayexpress
Transcriptomicshuman epidermoid carcinoma cell: Control (A431-P cells) vs. highly invasive subline (A431-III cells)
Transcriptional profiling of human epidermoid carcinoma cell comparing control A431-P cells with highly invasive subline A431-III cells No treatmentt, A431-P cells vs. A431-III cells. A431-P cells are used as a reference to invstigate A431-III cells.
ORGANISM(S): Homo sapiens 
2013-06-18 | E-GEOD-47996 | biostudies-arrayexpress
TranscriptomicsIdentification of Biofilm Inhibitors from Streptomyces Strains for Reducing Pseudomonas aeruginosa Biofilm Formation
Biofilms are ubiquitous in natural, medical, and engineering environments. While most antibiotics that primarily aim to inhibit cell growth may result in bacterial drug resistance, biofilm inhibitors do not affect cell growth and there is less chance of developing resistance. This work sought to id...
ORGANISM(S): Pseudomonas aeruginosa 
2013-03-21 | E-GEOD-28194 | biostudies-arrayexpress
ProteomicsP bodies coat germ granules to promote transgenerational gene silencing in C. elegans
Formation of biomolecular condensates have emerged as a critical mechanism for compartmentation in living cells. Despite interactions between distinct condensates have been reported, the biological relevance of such interactions remains elusive. In germ cells, small RNA silencing factors are enriche...
ORGANISM(S): Caenorhabditis elegans 
2023-06-16 | PXD037342 | Pride
Cgh-1 P body Germ granule Rnai inheritance 
TranscriptomicsTranscription profiling of C. elegans gene response to the pathogenic P. aeruginosa strain PA14.
Analysis of differential gene expression in C. elegans adults exposed to three different bacteria: E. coli strain OP50, wild-type P. aeruginosa PA14 and gacA mutant PA14. Samples were analyzed at 4 hours and 8 hours after exposure to the different bacteria. These studies identified C. elegans genes ...
ORGANISM(S): Caenorhabditis elegans 
2008-06-14 | E-GEOD-5793 | biostudies-arrayexpress
UnknownTIRR regulates mRNA export and association with P-bodies in response to DNA damage.
Not available
S-EPMC11551748 | biostudies-literature
TranscriptomicsEST mining of yellow potato and gene expression profiling of its infection by P. infestans using SAGE - SOLEXA
The late blight pathogen, Phytophthora infestans has a broad host range within the Solanaceae family, including yellow potato (Solanum phureja). The disease caused by P. infestans in S. phureja is poorly understood and is a major concern in Colombia. Expressed Sequence Tag (EST) libraries obtained f...
ORGANISM(S): Solanum phureja 
2009-06-13 | E-GEOD-11781 | biostudies-arrayexpress
ProteomicsProteomic analysis of Pseudomonas aeruginosa purified outer membrane vesicle (OMV) extracts exposed to sex steroids
The project aims to elucidate mechanisms driving P. aeruginosa response to sex steroids hormones. An experiment involving outer membrane vesicles (OMV) extraction combined with Mass spectroscopy was performed to identify differences in P. aeruginosa OMVs proteins produced while being exposed to estr...
ORGANISM(S): Pseudomonas aeruginosa PAO1 
2021-09-08 | PXD019470 | Pride
Outer membrane vesicles Pseudomonas aeruginosa Sex steroid 
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