Legumes - OmicsDI

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Unknown (2655)
Genomics (481)
Transcriptomics (118)
Proteomics (32)
Metabolomics (13)
Clinical (4)
Other (3)
Methylation profiling (2)
Models (1)

Organisms

Medicago truncatula (50)
Sinorhizobium meliloti (17)
Glycine max (10)
Lotus japonicus (7)
Medicago sativa (7)
Rhizobium leguminosarum (6)
Homo sapiens (5)
Cicer arietinum (4)
Vigna unguiculata (4)
Phaseolus vulgaris (4)
Arachis hypogaea (3)
Vigna radiata (3)
Robinia pseudoacacia (2)
Sinorhizobium fredii NGR234 (2)
Macroptilium atropurpureum (2)
Brassica napus (2)
Triticum aestivum (2)
Arabidopsis thaliana (2)
Paraburkholderia phymatum STM815 (2)
Lens culinaris (2)
Bradyrhizobium diazoefficiens USDA 110 (2)
Adenolobus pechuelii (1)
Lathyrus sativus (1)
Casuarina glauca (1)
Sinorhizobium medicae (1)
Alnus glutinosa (1)
Pseudomonas putida (1)
Salmo salar (1)
Phaseolus lunatus (1)
Vigna unguiculata subsp. unguiculata (1)

Organisms

Medicago truncatula (25)
root metagenome (11)
Lotus japonicus (8)
soil metagenome (8)
Glycine max (7)
Vigna unguiculata (5)
Vigna radiata (4)
Sinorhizobium meliloti (4)
Paraburkholderia phymatum STM815 (3)
Paraburkholderia youngii (3)
Robinia pseudoacacia (3)
Bradyrhizobium (3)
Lathyrus oleraceus (3)
Cicer arietinum (3)
plant metagenome (3)
Arachis hypogaea (3)
Homo sapiens (3)
Paraburkholderia tuberum (2)
Bradyrhizobium sp. ORS 285 (2)
Rhizobium leucaenae USDA 9039 (2)
Trifolium pratense (2)
Lens culinaris (2)
Bradyrhizobium septentrionale (2)
Sinorhizobium fredii NGR234 (2)
Bradyrhizobium diazoefficiens USDA 110 (2)
Vigna umbellata (2)
Glycyrrhiza uralensis (2)
Phaseolus vulgaris (2)
Bacteria (2)
human gut metagenome (2)

Repository

ENA (472)
biostudies-arrayexpress (72)
geo (61)
pride (18)
MetaboLights (13)
PAXDB (6)
jPOST (4)
iProX (2)
MassIVE (2)
BioModels (1)

Tissue

Plant cell (8)
Leaf (5)
Root nodule (3)
Seed (2)
Bacteroid (1)
Root (1)

Disease

Colonic Neoplasms (2)
Colorectal Neoplasms (2)

Technology Type

Mass Spectrometry (18)
Mass spectrometry (11)
Shotgun proteomics (8)
Data-independent acquisition (3)
Gel-based experiment (3)
Mass spectrometry assay (2)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

GC-MS (6)
Axon- GenePix4000B (3)
Scanning hardware (3)
Illumina HiSeq 2500 (3)
Illumina NovaSeq 6000 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
RNeasy Plant Mini Kit (Qiagen) (1)
BAS-1800 [FUJIFILM] (1)
GenePix Personal 4100A [Axon Instruments] (1)
Orbitrap Eclipse (1)
Q Exactive mass spectrometer (Thermo Scientific) (1)
Q Exactive (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2015 (17)
2026 (16)
2025 (15)
2011 (12)
2024 (12)
2016 (11)
2012 (10)
2010 (10)
2008 (10)
2021 (8)
2014 (7)
2018 (7)
2009 (6)
2022 (6)
2020 (5)
2017 (5)
2007 (5)
2023 (4)
2013 (4)
2006 (4)
2019 (4)
2005 (1)

UNIPROT ID/AC

3880.AES58538 (6)
3880.AES58539 (6)
3880.AES58557 (6)
3880.AES58577 (6)
3880.AES58595 (6)
3880.AES58596 (6)
3880.AES58598 (6)
3880.AES58611 (6)
3880.AES58637 (6)
3880.AES58673 (6)
3880.AES58697 (6)
3880.AES58766 (6)
3880.AES58788 (6)
3880.AES58833 (6)
3880.AES58880 (6)
3880.AES58897 (6)
3880.AES58900 (6)
3880.AES58960 (6)
3880.AES58990 (6)
3880.AES59003 (6)
3880.AES59180 (6)
3880.AES59185 (6)
3880.AES59286 (6)
3880.AES59334 (6)
3880.AES59339 (6)
3880.AES59397 (6)
3880.AES59531 (6)
3880.AES59549 (6)
3880.AES59555 (6)
3880.AES59608 (6)

CHEBI ID

CHEBI:17620 (9)
CHEBI:17268 (8)
CHEBI:32374 (8)
CHEBI:340824 (7)
CHEBI:17505 (7)
CHEBI:27956 (7)
CHEBI:5457 (7)
CHEBI:30997 (7)
CHEBI:16634 (7)
CHEBI:16551 (7)
CHEBI:15963 (7)
CHEBI:30763 (7)
CHEBI:17203 (7)
CHEBI:16015 (7)
CHEBI:18266 (6)
CHEBI:16977 (6)
CHEBI:15586 (6)
CHEBI:16934 (6)
CHEBI:16534 (6)
CHEBI:15824 (6)
CHEBI:17113 (6)
CHEBI:15428 (6)
CHEBI:37654 (6)
CHEBI:16610 (6)
CHEBI:4167 (6)
CHEBI:16002 (6)
CHEBI:74324 (6)
CHEBI:17115 (6)
CHEBI:16335 (6)
CHEBI:16857 (6)

Metabolite Name

Galactinol (7)
Glycerophosphoglycerol (7)
Ferulic acid (7)
Myo-inositol (7)
Ononitol (6)
L-alanine (6)
D-(−)-2-methylmalic acid (6)
Phosphoric acid monomethyl ester (6)
3-cyano-L-alanine (6)
Trans-4-coumaric acid (6)
L-dehydroascorbic acid (6)
D-galactonic acid (6)
1,6-anhydro-beta-D-glucose (6)
Spermidine (6)
Raffinose (6)
D-glucopyranose (6)
D-ribitol (6)
D-saccharic acid (6)
Sucrose (6)
4-hydroxybenzoic acid (6)
L-threonine (6)
L-glyceric acid (6)
Fumaric acid (6)
L-glutamic acid (6)
L-proline (6)
L-serine (6)
D-fructose (6)
D-pinitol (6)
Galactaric acid (5)
D-gulonic acid (5)

First Public Date

2013 (67)
2026 (57)
2024 (57)
2020 (52)
2025 (39)
2023 (36)
2022 (31)
2017 (28)
2021 (27)
2019 (20)
2018 (20)
2016 (15)
2014 (13)
2015 (10)

Modelling Approach

Constraint-based model (1)

Study status

Completed (2)
Active, not recruiting (1)
Recruiting (1)

Lab affiliation

School of Molecular Sciences, The University of Western Australia, Perth, WA, Australia. harvey.millar@uwa.edu.au. The ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, WA, Australia. harvey.millar@uwa.edu.au. (2)
1Department of Food Characterization, Quality and Safety, Institute of Food Science, Technology and Nutrition (ICTAN-CSIC), Madrid, Spain (1)
Biomolecular Mass Spectrometry and Proteomics (1)
Departamento de Produtos Naturais, Laboratório de Bioquímica de Proteases e Inibidores de Proteases Naturais e Sintéticos, Fundação Oswaldo Cruz (Fiocruz),Brasil (1)
Department of Plant Sciences University of Oxford South Parks Road Oxford, OX1 3RB, UK (1)
FRAIB, CNRS (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Group leader Microbiome Biology Department of Molecular Systems Biology Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany (1)
Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC y Universidad de Sevilla, 41092 Sevilla, Spain (1)
Instituto de Biotecnología y Biología Molecular Facultad de Ciencias Exactas. Universidad Nacional de La Plata. CCT La Plata CONICET Calle 49 y 115 1900. La Plata Argentina (1)
James McGill Professor Director and CEO, BioFuelNet Canada Director, McGill Network for Innovation in Biofuels and Bioproducts Director, Eastern Canadian Oilseeds Development Initiative Plant Science Department, McGill University 21111 Lakeshore Road Ste. Anne de Bellevue, Quebec Canada H9X3V9 (1)
McDonald Professor of Palaeoproteomics, McDonald Institute for Archaeological Research, University of Cambridge, UK (1)
Mendel University in Brno, CEITEC MENDELU (1)
Research Group for Food Allergy, National Food Institute, Technical University of Denmark (1)
Research Scientist (1)
School of Biological Sciences, University of Hong Kong; Pokfulam, Hong Kong, China (1)
School of Medicine, UCD, Dublin, Ireland (1)

Keyword

Legumes (3)
Diet (2)
Inflammation Obesity (1)
Prevention & control (1)
Functional food (1)
Oryza sativa (1)
Rice Bran (1)
Phaseolus vulgaris L. (1)
Prebiotics (1)
Nutrition Assessment (1)
Fiber-rich Foods (1)
Plant protein (1)
Animal protein (1)
Red meat (1)
Intestinal health (1)
Microbiome (1)
Prevention (1)
Cancer prevention (1)
Adenoma (1)
Metabolomics (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (3)

Study type

Transcription profiling by array (50)
RNA-seq of coding RNA (10)
RNA-seq of non coding RNA (6)
Interventional (4)
Transcription profiling by tiling array (3)
Unknown experiment type (2)

Release Date

2022 (371)
2023 (291)
2021 (270)
2025 (256)
2024 (233)
2020 (219)
2019 (177)
2017 (146)
2018 (136)
2016 (124)
2015 (90)
2014 (82)
2012 (49)
2026 (44)
2011 (43)
2013 (35)
2010 (29)
2008 (28)
2009 (27)
2007 (19)
2006 (12)
2005 (9)
2002 (8)
2004 (7)
2003 (6)
2001 (5)
1999 (5)
2000 (2)
1998 (2)
1997 (2)

Location

United States (3)
Finland (1)

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Legumes

Legumes Raw sequence reads

PRJNA1188642 | ENA

Grain legumes mycobiome

PRJEB107002 | ENA

miRNAs target conserved motifs of diverse genes encoding NB-LRRs to trigger trans-acting siRNAs in legumes.

Trans-acting siRNAs (tasiRNAs) negatively regulate target transcripts and are characterized by siRNAs spaced in 21-nucleotide 'phased' intervals. TasiRNAs have not been extensively described in many plant species. We identified dozens of new miRNAs in Medicago and soybean and confirmed 119 Medicago ...

ORGANISM(S): Arachis hypogaea

2011-10-24 | E-GEOD-31061 | biostudies-arrayexpress

Consumer Understanding of the Australian Dietary Guidelines: Recommendations for Legumes and Whole Grains.

Not available

S-EPMC9099598 | biostudies-literature

Invasive legumes can associate with many mutualists of native legumes, but usually do not.

Not available

S-EPMC5648655 | biostudies-literature

AgroDIV Legumes

PRJEB80251 | ENA

Mesorhizobia of Legumes

PRJNA399611 | ENA