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TranscriptomicsStudy of the response of Aspergillus niger to three levels of ambient pH
The multiple modes of response to ambient pH were explored and new regulatory structures determined. Biological triplicates from the mid-exponential growth phase of controlled bioreactor batch-cultivations of A. niger.
ORGANISM(S): Aspergillus niger 
2009-05-18 | E-GEOD-11725 | biostudies-arrayexpress
TranscriptomicsA tri-species Aspergillus array (oryzae arrays)
The full genome sequencing of the filamentous fungi Aspergillus nidulans, Aspergillus niger and Aspergillus oryzae has opened the possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are presenting an Affymetrix GeneChip developed for tra...
ORGANISM(S): Aspergillus oryzae 
2008-02-15 | E-GEOD-9277 | biostudies-arrayexpress
TranscriptomicsA tri-species Aspergillus array (niger arrays)
The full genome sequencing of the filamentous fungi Aspergillus nidulans, Aspergillus niger and Aspergillus oryzae has opened the possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are presenting an Affymetrix GeneChip developed for tra...
ORGANISM(S): Aspergillus niger 
2008-02-15 | E-GEOD-9276 | biostudies-arrayexpress
TranscriptomicsA tri-species Aspergillus array
This SuperSeries is composed of the following subset Series: GSE9275: A tri-species Aspergillus array (nidulans arrays) GSE9276: A tri-species Aspergillus array (niger arrays) GSE9277: A tri-species Aspergillus array (oryzae arrays) Keywords: SuperSeries Refer to individual Series
ORGANISM(S): Aspergillus oryzae 
2008-02-10 | E-GEOD-9298 | biostudies-arrayexpress
TranscriptomicsA tri-species Aspergillus array (nidulans arrays)
The full genome sequencing of the ?lamentous fungi Aspergillus nidulans, Aspergillus niger and Aspergillus oryzae has opened the possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are presenting an A?ymetrix GeneChip developed for tra...
ORGANISM(S): Emericella nidulans 
2008-02-15 | E-GEOD-9275 | biostudies-arrayexpress
GenomicsGenome-wide CRISPR knockout screen in Mycobacterium tuberculosis infected macrophages to identify regulators of TNF and iNOS expression
To elucidate the early regulators of inflammation during Mycobacterium tuberculosis infection, we performed a genome-wide CRISPR knockout screen in macrophages to identify genes that influence the induction of TNF and iNOS upon infection. A genome-wide knockout library in murine macrophages was infe...
ORGANISM(S): Mus musculus 
2026-04-29 | E-MTAB-15739 | biostudies-arrayexpress
UnknownLifelong exposure to high-altitude hypoxia in humans is associated with improved redox homeostasis and structural-functional adaptations of the neurovascular unit.
Not available
S-EPMC10952731 | biostudies-literature
TranscriptomicsRNA-seq profiling of Listeria monocytogenes infected macrophages lacking Irf2, Irf9, or Irf2 and Irf9, as well as scramble controls
RNA-seq profiling of macrophages lacking Irf2, Irf9, or Irf2 and Irf9, as well as scramble controls was performed. Macrophages were infected with Listeria monocytogenes or uninfected under mock conditions and total RNA was harvested 2 hours post infection.
ORGANISM(S): Mus musculus 
2026-04-29 | E-MTAB-15742 | biostudies-arrayexpress
GenomicsGenome-wide CRISPR knockout screen to identify genes involved in macrophage differentiation
To identify genes involved in macrophage differentiation, a genome-wide CRISPR knockout library in macrophage progenitors was differentiated into macrophages. Samples were collected from the progenitor library at day 0, from a library maintained as progenitors for seven days, and from macrophages af...
ORGANISM(S): Mus musculus 
2026-04-29 | E-MTAB-15740 | biostudies-arrayexpress
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