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MetabolomicsA Novel Approach to Characterize the Lipidome of Marine Archaeon Nitrosopumilus maritimus by Ion Mobility Mass Spectrometry

Archaea are differentiated from the other two domains of life by their biomolecular characteristics. One such characteristic is the unique structure and composition of their lipids. Characterization of the whole set of lipids in a biological system (the lipidome) remains technologically challengi...

2021-12-16 | MTBLS3714 | MetaboLights
GenomicsChIP-seq of WT(with 35S-SUC2 transgene) and proMBD7::gMBD7:4xMYC transgenic plants
In eukaryotes, heterochromatin is characterized by numerous epigenetic marks, including DNA methylation. Spreading of these marks into nearby active genes must be avoided in order to maintain appropriate gene expression. Here, we uncover Arabidopsis Methyl-CpG-Binding Domain 7 (MBD7) and Increased D...
ORGANISM(S): Arabidopsis thaliana 
2015-01-29 | E-GEOD-58789 | biostudies-arrayexpress
ProteomicsProteomic Screening of OLP/OLL-EVs
In this project, we first screened proteomics of OLP/OLL tissue-derived extracellular vesiclesEVs
ORGANISM(S): Homo Sapiens 
2021-06-25 | PXD026938 |
GenomicsMethlyC-Seq of ibm1-4
Using MethylC-Seq to provide single-base resulution of DNA methylation status in ibm1-4 mutant 1 sample examined, ibm1-4 mutant
ORGANISM(S): Arabidopsis thaliana 
2013-09-06 | E-GEOD-48053 | biostudies-arrayexpress
TranscriptomicsmRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1
1, Using mRNA-Seq to get expression profiling of asi1-1 mutant and WT; 2, Using MethylC-Seq to provide single-base resulution of DNA methylation status in asi1-1 mutant mRNA-Seq: 2 samples examined, Col-0 wild-type with 35S-SUC2 transgene(termed as WT) and asi1-1 mutant (Col-0 background with 35S-SU...
ORGANISM(S): Arabidopsis thaliana 
2013-09-06 | E-GEOD-48026 | biostudies-arrayexpress
ProteomicsSILAC-based quantitative mass spectrometry analysis of RPA1-containing protein complex
SILAC-based quantitative mass spectrometry analysis of RPA1-containing protein complex
ORGANISM(S): Homo Sapiens 
2021-08-25 | PXD028105 |
TranscriptomicsRNA-seq of retinal organoids derived from RPGR patient-, control- and mutation-corrected-iPSC at different developmental stages
Retinitis pigmentosa (RP) is an irreversible and inherited retinopathy. RPGR mutations are the most common causes of this disease. It remains challenging to decipher the mechanism of RPGR mutation because of the lack of appropriate study models. The substitution of patient-specific diseased retina w...
ORGANISM(S): Homo sapiens 
2020-02-01 | E-MTAB-6490 | biostudies-arrayexpress
ProteomicsA proteomic investigation of the dorsal muscle in Tibetan sheep
Firstly, the back muscle samples of Tibetan sheep of the same age were collected for subsequent proteomic analysis. The integrated and analyzed results aimed to identify proteins and pathways associated with meat quality and growth regulation in sheep, thereby providing a theoretical foundation for...
ORGANISM(S): Ovis Aries 
PXD054235 |
ProteomicsProteomic analysis of human aqueous humor from Fuchs uveitis syndrome
We performed liquid chromatography-tandem mass spectrometry-based proteomic methods to evaluate the aqueous humor protein profiles of all 37 samples.
ORGANISM(S): Homo Sapiens 
PXD043597 |
ProteomicsComprehensive proteomic profiling of aqueous humor in idiopathic uveitis and Vogt-Koyanagi-Harada syndrome
In this study, 44 AH samples were subjected to a quantitative analysis using SWATH, and 557 proteins were identified in each sample according to a well-established library of 634 proteins. Proteomic profiles in AH of IU and VKH groups were significantly different from normal controls, whereas relati...
ORGANISM(S): Homo Sapiens 
PXD041318 |
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