Levy R R - OmicsDI

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Unknown (3428)
Transcriptomics (81)
Proteomics (57)
Genomics (19)
Metabolomics (7)
Models (2)
Genomic (2)
Other (1)

Organisms

Homo sapiens (70)
Aerococcus urinae NBRC 15544 = CCUG 36881 (43)
Andropogon gerardi (43)
Bacteria (43)
Bartonella quintana JK 31 (43)
Canis lupus familiaris (43)
Cnidaria (43)
Ectopseudomonas oleovorans CECT 5344 (43)
Ensifer adhaerens (43)
Halictus scabiosae (43)
Human immunodeficiency virus 1 (43)
Mesocricetus auratus (43)
Miscanthus x giganteus (43)
Mus musculus (43)
Panicum virgatum (43)
Pseudomonas aeruginosa PA103 (43)
Pseudomonas aeruginosa SJTD-1 (43)
Rabies virus Nishigahara RCEH (43)
Rattus norvegicus (43)
Rattus rattus (43)
Mus musculus (19)
Zea mays (3)
Rattus norvegicus (1)
Acropora millepora (1)
Eucalyptus grandis (1)
Yersinia pestis (1)
Solanum lycopersicum (1)
Triticum aestivum (1)
Escherichia coli (1)
Saccharomyces cerevisiae (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (84)
pride (43)
EGA (16)
MassIVE (13)
MetaboLights (6)
BioModels (2)
dbGaP (2)
geo (1)
GNPS (1)
ENA (1)

Tissue

Cell culture (10)
B cell (6)
T cell (6)
Blood (5)
Epithelial cell (5)
Blood plasma (3)
Blood serum (3)
Melanocyte (3)
Permanent cell line cell (3)
Skin (3)
Cell suspension culture (2)
Lymph node (2)
Melanoma cell (2)
Spleen (2)
Blood cell (1)
Brain (1)
Breast (1)
Breast cancer cell line (1)
Colon (1)
Colorectal adenocarcinoma cell line (1)
Early embryonic cell (1)
Head and neck squamous cell carcinoma cell line (1)
Heart (1)
LCL-721 cell (1)
LNCaP cell (1)
Liver (1)
Lung (1)
Lymphoblast (1)
MiaPaCa-2 cell (1)
SW-620 cell (1)

Disease

Melanoma (5)
Colon cancer (3)
Pancreatic ductal adenocarcinoma (2)
HPV positive (1)
Acute myeloid leukemia (1)
Alzheimer's disease (1)
Burkitt lymphoma (1)
Castration-resistant prostate carcinoma (1)
Chronic lymphocytic leukemia (1)
Dementia (1)
Disease free (1)
Follicular lymphoma (1)
Head and neck squamous cell carcinoma (1)
Human immunodeficiency virus infectious disease (1)
Lung non-squamous non-small cell carcinoma (1)
Lymphoma (1)
Mantle cell lymphoma (1)
Neurodevelopmental delay (1)
Pancreatic cancer (1)
Pediatric osteosarcoma (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (43)
Shotgun proteomics (21)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (6)
Mass spectrometry (5)
Data-dependent acquisition (4)
Data-independent acquisition (3)
Illumina HiSeq 2500, ILLUMINA (2)
All-ion fragmentation (2)
DiaPASEF (2)
HDMSE (2)
Mass spectrometry assay (1)
Affinity proteomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive (5)
LTQ (3)
LTQ Orbitrap Velos (3)
Orbitrap Fusion Lumos (2)
LTQ XL (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 3000 (1)
Autoflex II (1)
LTQ Orbitrap Elite (1)
MALDI Synapt G2-S HDMS (1)
Orbitrap Eclipse (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Thermo Fusion Lumos (1)
TimsTOF fleX (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
Liquid Chromatography MS - - - Q Exactive (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Gas Chromatography MS - positive (1)

Publication Date

2022 (13)
2015 (13)
2012 (10)
2024 (9)
2011 (9)
2010 (9)
2026 (7)
2013 (7)
2009 (7)
2023 (7)
2021 (7)
2025 (7)
2017 (6)
2016 (6)
2014 (6)
2007 (5)
2018 (5)
2005 (4)
2020 (4)
2019 (4)
2006 (3)
2008 (1)
2002 (1)

UNIPROT ID/AC

P49445 (1)
Q64623 (1)
A1L1M0 (1)
P54748 (1)
P18090 (1)
Q8CGK7 (1)
P26769 (1)
Q99MC6 (1)
P63086 (1)
Q01986 (1)

CHEBI ID

CHEBI:16113 (4)
CHEBI:133148 (3)
CHEBI:28101 (3)
CHEBI:17716 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:22660 (3)
CHEBI:18186 (3)
CHEBI:28757 (3)
CHEBI:37684 (3)
CHEBI:26986 (3)
CHEBI:16811 (3)
CHEBI:17234 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:17754 (3)
CHEBI:15963 (3)
CHEBI:28044 (3)
CHEBI:16566 (3)
CHEBI:27266 (3)
CHEBI:25094 (3)
CHEBI:18257 (3)
CHEBI:6650 (3)
CHEBI:18237 (3)
CHEBI:16958 (3)
CHEBI:15428 (3)
CHEBI:17489 (1)
CHEBI:15422 (1)
CHEBI:17552 (1)
CHEBI:16027 (1)

Metabolite Name

Sphinganine (3)
Deoxycholic acid glucuronide (2)
8-methoxykynurenate (2)
Azithromycin (2)
Glycochenodeoxycholate 3-sulfate (2)
Propyl 4-hydroxybenzoate (2)
Famotidine (2)
Sertraline (2)
Pantoate (2)
L-urobilin (2)
Hydantoin-5-propionate (2)
Beta-cryptoxanthin (2)
Hyocholate (2)
Beta-sitosterol (2)
2-hydroxybehenate (2)
2-hydroxylaurate (2)
Valylglycine (2)
Beta-citrylglutamate (2)
Isoleucylglycine (2)
N1,N12-diacetylspermine (2)
Tryptophan betaine (2)
Theophylline (2)
Theobromine (2)
Taurolithocholate 3-sulfate (2)
Tartarate (2)
Pregnenolone sulfate (2)
Pregnanediol-3-glucuronide (2)
Maltotriose (2)
Glycoursodeoxycholate (2)
Glycohyocholate (2)

IsPrivate

False (2)

Submitter Keywords

Machine Learning Model (1)

First Public Date

2022 (1)

Modelling Approach

Other (1)
Ordinary differential equation model (1)

Study type

Transcription profiling by array (56)
RNA-seq of coding RNA (7)
RNA-seq of non coding RNA (5)
Unknown experiment type (4)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
Genotyping by array (2)
ChIP-seq (2)
Transcription profiling by SAGE (1)
Proteomic profiling by array (1)

Release Date

2021 (399)
2022 (367)
2023 (335)
2025 (333)
2024 (317)
2020 (247)
2019 (224)
2018 (190)
2016 (164)
2015 (155)
2017 (150)
2014 (132)
2013 (87)
2012 (86)
2011 (76)
2010 (73)
2009 (53)
2026 (42)
2008 (25)
2006 (15)
2007 (13)
2005 (10)
2003 (4)
2001 (4)
2002 (3)
2004 (3)
2000 (2)
1999 (2)
1998 (1)

Lab affiliation

Department of Human Genetics and Biochemistry Sackler School of Medicine Tel Aviv University Tel-Aviv, Israel 69978 (5)
Department of Chemical & Systems Biology, Stanford University, USA (3)
Department of Chemical & Systems Biology Stanford University USA (2)
Department of Chemistry & Chemical Biology, Northeastern University (2)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (2)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Biosciences and bioengineering Department, IIT Bombay (1)
Cancer Proteomics Lab Department of Molecular Cell Biology Weizmann Institute of Science, Rehovot (1)
Computational Systems Biochemistry, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany; Verily Life Sciences, 269 E Grand Ave, South San Francisco, CA 94080, USA (1)
Department of Biochemistry, University of Washington, School of Medicine, Seattle, WA 98195, USA (1)
Department of Ecology, Evolution and Behavior Alexander Silberman Institute of Life Sciences Faculty of Science The Hebrew University of Jerusalem (1)
Department of Molecular Cell Biology The Weizmann Institute of Science Rehovot, Israel (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel. (1)
Division of Oncogenomics, Oncode institute, The Netherlands Cancer Institute, Plesmanlaan 121, 1066CX, Amsterdam, The Netherlands; (1)
Faculty of Biochemistry, Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel (1)
Gladstone Institure for Immunology; The J David Gladstone Institutes; San Francisco, CA, USA (1)
Harvard Medical School (1)
Harvard University Medical School, Department of Cell Biology (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Institute for Human Genetics, University Medical Center Hamburg Eppendorf, Hamburg, Germany (1)
John Cijiang He, MD/PhD Division of Nephrology, Box 1243 Mount Sinai School of Medicine One Gustave L Levy Place, New York NY 10029 Tel: 212-659-1703, Fax: 212-987-0389 (1)
Molecular Cell Biolody, Weizmann Institute of Science. (1)
Molecular Proteomics Laboratory, Biomedical Research Center (BMFZ), Heinrich Heine University, Medical Faculty, Düsseldorf, Germany (1)
Molecular cell biology department Weizmann Institute of Science (1)
NKI Proteomics Facility, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, the Netherlands (1)
Nella and Leon Benoziyo Building for Biological Sciences, Weizmann Institute (1)
Stowers Institute for Medical Research (1)
Target Discovery Institute Nuffiled Dept. of Medicine University of Oxford (1)
The Herbert and Jackeline Krieger Klein Alzheimer's Research Center, Brain Health Institute, Rutgers University (1)

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Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions.

Not available

S-EPMC9303298 | biostudies-literature

RLSuite: An Integrative R-Loop Bioinformatics Framework.

Not available

S-EPMC10827345 | biostudies-literature

Exploration and analysis of R-loop mapping data with RLBase.

Not available

S-EPMC9825527 | biostudies-literature

Real-time quantitative PCR analysis of miRNAs in HIV patients who did (cases) or did not (controls) experience Type 1 MI

RT-PCR of platelet-poor plasma samples per Freedman JE, Gerstein M, Mick E, Rozowsky J, Levy D, Kitchen R, et al. Diverse human extracellular RNAs are widely detected in human plasma. Nat Commun 2016; 7. doi:10.1038/ncomms11106

ORGANISM(S): Homo sapiens

2022-08-12 | GSE135758 | GEO

Paraffin-based 6-gene model predicts outcome in diffuse large B-cell lymphoma patients treated with R-CHOP.

Not available

S-EPMC2424149 | biostudies-literature

The impact of UK soft drinks industry levy on manufacturers' domestic turnover.

Not available

S-EPMC7615081 | biostudies-literature

17(R)-Resolvin D1 differentially regulates TLR4-mediated responses of primary human macrophages to purified LPS and live E. coli.

Not available

S-EPMC3157902 | biostudies-literature

The impact of the UK soft drink industry levy on the soft drink marketplace, 2017-2020: An interrupted time series analysis with comparator series.