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TranscriptomicsA Genome-Wide Characterization of New and Drought Stress Responsive MicroRNAs in Populus euphratica
We present an efficient method to genome-wide discover new and drought stress responsive miRNAs in P. euphratica. High throughput sequencing of P. euphratica leaves found 197 conserved miRNAs between P. euphratica and Populus trichocarpa. Meanwhile, 189 new miRNAs which belonged to 120 families were...
ORGANISM(S): Populus euphratica 
2011-04-25 | E-GEOD-25747 | biostudies-arrayexpress
GenomicsGenome-wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL 3 Reveals Its Novel Function in Arabidopsis Development
This SuperSeries is composed of the following subset Series: GSE30711: ChIP-Seq data from Arabidopsis thaliana under dark and far-red light GSE30712: Expression data from Arabidopsis thaliana under dark and far-red light Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2011-12-31 | E-GEOD-30713 | biostudies-arrayexpress
TranscriptomicsThe photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2014-08-04 | E-GEOD-58084 | biostudies-arrayexpress
GenomicsThe photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light [ChIP-seq]
To incorporate the far-red light (FR) signal into a strategy for optimizing plant growth, FAR-RED ELONGATED HYPOCOTYL1 (FHY1) mediates the nuclear translocation of the FR photoreceptor phytochrome A (phyA) and facilitates the association of phyA with the promoters of numerous associated genes crucia...
ORGANISM(S): Arabidopsis thaliana 
2014-08-04 | E-GEOD-58083 | biostudies-arrayexpress
GenomicsArabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways [ChIP-seq]
The far-red light (FR) photoreceptor phytochrome A (phyA) contains no DNA binding domain but associates with CHS promoter through its chaperon FHY1 and transcription factors to regulate transcription. Here, we performed a genome-wide identification of phyA targets using a combination of phyA ChIP- a...
ORGANISM(S): Arabidopsis thaliana 
2014-05-06 | E-GEOD-48769 | biostudies-arrayexpress
TranscriptomicsThe photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light [RNA-Seq]
To incorporate the far-red light (FR) signal into a strategy for optimizing plant growth, FAR-RED ELONGATED HYPOCOTYL1 (FHY1) mediates the nuclear translocation of the FR photoreceptor phytochrome A (phyA) and facilitates the association of phyA with the promoters of numerous associated genes crucia...
ORGANISM(S): Arabidopsis thaliana 
2014-08-04 | E-GEOD-58082 | biostudies-arrayexpress
GenomicsArabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2014-05-06 | E-GEOD-48770 | biostudies-arrayexpress
TranscriptomicsArabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways [RNA-seq]
The far-red light (FR) photoreceptor phytochrome A (phyA) contains no DNA binding domain but associates with CHS promoter through its chaperon FHY1 and transcription factors to regulate transcription. Here, we performed a genome-wide identification of phyA targets using a combination of phyA ChIP- a...
ORGANISM(S): Arabidopsis thaliana 
2014-05-06 | E-GEOD-48767 | biostudies-arrayexpress
TranscriptomicsEnhanced Salicylic Acid Biosynthesis Is Involved in Heterosis for Bacterial Defense in Arabidopsis
We provide evidence that heterosis for bacterial defense exists in hybrids crossed between some Arabidopsis accessions. Comparison of transcriptomes between hybrids exhibiting heterosis for disease resistance and their parents after inoculation with Pst DC3000 revealed that several key genes involve...
ORGANISM(S): Arabidopsis thaliana 
2015-06-02 | E-GEOD-62256 | biostudies-arrayexpress
TranscriptomicsExpression data from Arabidopsis thaliana under dark and far-red light
FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE 1 (FAR1) are two transposase-derived transcription factors initially identified as the key components in phytochrome A signaling and recently shown to function in the circadian clock. However, whether FHY3 and FAR1 are in...
ORGANISM(S): Arabidopsis thaliana 
2011-08-01 | E-GEOD-30712 | biostudies-arrayexpress
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