Li Chang C - OmicsDI

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Unknown (4108)
Transcriptomics (181)
Proteomics (131)
Metabolomics (35)
Genomics (24)
Models (5)
Multiomics (4)

Organisms

Homo sapiens (173)
Mus musculus (79)
Arabidopsis thaliana (9)
Rattus norvegicus (7)
Pinus radiata (5)
Gallus gallus (5)
Saccharomyces cerevisiae (5)
Picea abies (2)
Zea mays (2)
Oryza sativa (2)
Arabidopsis (1)
Chlamydomonas reinhardtii (1)
Rattus (1)
Gastrodia elata (1)
Gracilaria tenuistipitata (1)
Pristionchus pacificus (1)
Populus x canadensis (1)
uncultured bacterium (1)
Bemisia tabaci (1)
Corynebacterium glutamicum (1)
Populus euphratica (1)
Citrus sinensis (1)
Schizosaccharomyces pombe (1)
Populus trichocarpa (1)
Vitis vinifera (1)
Ovis aries (1)
Pseudomonas aeruginosa (1)
Corynebacterium glutamicum ATCC 13032 (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (188)
pride (80)
iProX (39)
MetaboLights (35)
EGA (17)
MassIVE (9)
BioModels (5)
PeptideAtlas (3)

Tissue

Cell culture (14)
Epithelial cell (10)
Leaf (5)
Lung (5)
Brain (4)
Liver (4)
Permanent cell line cell (4)
Testis (4)
Others (3)
Blood plasma (3)
Bone marrow (3)
Colon (3)
Fibroblast (3)
Heart (3)
Kidney (3)
Root (3)
Rosette (2)
Spleen (2)
Whole body (2)
Blood (1)
Blood cell (1)
Blood serum (1)
Bone tissue (1)
Cardiocyte (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Cotyledon (1)
Dendritic cell (1)
Dermal fibroblast (1)
Diploid cell (1)

Disease

Breast cancer (5)
Disease free (4)
Osteosarcoma (3)
Colon cancer (2)
Lung adenocarcinoma (2)
Bladder cancer (1)
Papillary thyroid carcinoma (1)
Autism spectrum disorder (1)
Brain glioblastoma multiforme (1)
Carcinoma (1)
Cardiovascular system disease (1)
Diabetic retinopathy (1)
Gastric adenocarcinoma (1)
Lung carcinoma (1)
Lung small cell carcinoma (1)
Lymphoma (1)
Ovarian cancer (1)
Ovary epithelial cancer (1)
Prostate adenocarcinoma (1)
Rheumatoid arthritis (1)
Severe acute respiratory syndrome (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (80)
Shotgun proteomics (36)
Mass spectrometry (31)
Bottom-up proteomics (19)
Data-dependent acquisition (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Gel-based experiment (6)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
HDMSE (2)
Proteogenomics (2)
SWATH MS (2)
AB SOLiD System 3.0 (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
Data-independent acquisition (1)
MSE (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (12)
Liquid Chromatography MS - negative - reverse phase (11)
Liquid Chromatography MS - negative - reverse-phase (5)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - positive - reverse-phase (4)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - positive (3)
Illumina NovaSeq 6000 (2)
LTQ Orbitrap Velos (2)
Orbitrap Fusion Lumos (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina Genome Analyzer IIx (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2500 (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
TripleTOF 5600 (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - HILIC (1)

Publication Date

2014 (35)
2013 (32)
2010 (30)
2023 (28)
2022 (26)
2012 (24)
2011 (22)
2025 (22)
2024 (21)
2021 (20)
2026 (18)
2015 (17)
2020 (13)
2019 (11)
2016 (9)
2008 (8)
2005 (5)
2017 (5)
2009 (5)
2018 (5)
2007 (2)
2006 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
O43526 (1)
O88944 (1)
P29992 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15891 (10)
CHEBI:15422 (2)
CHEBI:15996 (1)
CHEBI:16595 (1)
CHEBI:16749 (1)
CHEBI:16761 (1)
CHEBI:16856 (1)
CHEBI:17306 (1)
CHEBI:17526 (1)
CHEBI:17552 (1)
CHEBI:17634 (1)
CHEBI:17665 (1)
CHEBI:17680 (1)
CHEBI:18348 (1)
CHEBI:18367 (1)
CHEBI:18420 (1)
CHEBI:19324 (1)
CHEBI:24636 (1)
CHEBI:25107 (1)
CHEBI:27569 (1)
CHEBI:28017 (1)
CHEBI:29042 (1)
CHEBI:29108 (1)
CHEBI:30111 (1)
CHEBI:38309 (1)
CHEBI:38322 (1)
CHEBI:43000 (1)
CHEBI:5235 (1)
CHEBI:61993 (1)
CHEBI:62006 (1)

Metabolite Name

Hypoxanthine (7)
Uracil (7)
Adenosine (6)
Creatinine (6)
Inosine (6)
Kynurenic acid (6)
Adenine (5)
Azelaic acid (5)
Citric acid (5)
Cytidine (5)
Genistein (5)
Itaconic acid (5)
Ornithine (5)
Pantothenic acid (5)
Uridine (5)
Xanthine (5)
Acetylcholine (4)
Adipic acid (4)
Alanine (4)
Asparagine (4)
Benzoic acid (4)
Betaine (4)
Bilirubin (4)
Cholic acid (4)
Choline (4)
Creatine (4)
Eicosapentaenoic acid (4)
Glutamic acid (4)
Glycocholic acid (4)
Guanine (4)

IsPrivate

False (5)

Model Flag

Non Kinetic (2)

Modelling Approach

Ordinary differential equation model (3)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (127)
RNA-seq of coding RNA (26)
Unknown experiment type (8)
Other (4)
ChIP-seq (4)
RNA-seq of non coding RNA (3)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
Ribo-seq (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)

Release Date

2025 (604)
2022 (482)
2023 (466)
2024 (420)
2021 (400)
2020 (312)
2019 (246)
2018 (228)
2016 (191)
2015 (190)
2017 (163)
2014 (156)
2013 (102)
2026 (89)
2012 (65)
2011 (57)
2010 (52)
2009 (25)
2008 (22)
2007 (10)
2005 (5)
2004 (3)
2002 (3)
2006 (2)
2000 (2)
1999 (1)

Lab affiliation

Genomics Research Center, Academia Sinica, Taipei, 11529 Taiwan (3)
NICM HRI, Western Sydney University (2)
Sichuan university (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
1Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA (1)
Associate Professor (1)
Associate Professor Purdue University (1)
Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， Beijing 102206 P.R. China. (1)
Beijing proteome research center, Beijing, China (1)
Biotechnology Center, National Chung-Hsing University, Taichung 402, Taiwan (1)
Breast Center, Baylor College of Medicine, Houston, TX US (1)
Cancer Institute, Fudan University Shanghai Cancer Center (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS (1)
Cancer Science Institute, National University of Singapore, Singapore (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Chang Gung Memorial Hospital (1)
Changhai Hospital, Naval Medical University, Shanghai, 200433, China. (1)
Collage of pharmaceutical science,Soochow University,Jiangsu Province,China (1)
Department of Cellular and Molecular Pharmacology, University of California San Francisco, USA (1)
Department of Chemistry, The University of Hong Kong (1)
Department of Chemistry, University of Texas at Austin, Austin (1)
Department of Integration of Chinese and Western Medicine, School of Basic Medicine Science, Peking University, China (1)
Department of Life Science, National Taiwan University (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden Centre for Inherited Metabolic Diseases, Karolinska University Hospital, Sweden (1)
Department of Medical Biotechnology and Laboratory Sciences, College of Medicine, Chang Gung University, Taiwan (1)
Department of Orthopedics, Xinqiao Hospital, Third Military Medical University (Army Medical University), Chongqing, China. (1)
Department of Plant Pathology, Entomology, and Microbiology. Iowa State University (1)
Department of Rheumatology and immunology, Second Xiangya Hospital of South Central University, No.139 Ren Min Department of Rheumatology and immunology, Second Xiangya Hospital of South Central University, No.139 Ren Min Middle Road, Chang Sha,China41001111111rtment of Rheumatology and immunology, Second Xiangya Hospital of South Central University, No.139 Ren Min Mid6969Chang Sha,China410011d, Chang Sha,China410011 (1)
Department of Thoracic Surgery, The Second Affiliated Hospital of Harbin Medical University, China (1)
Department of Thoracic Surgery, The Second Affiliated Hospital of Harbin Medical University, Harbin 150086, China (1)

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Metabolome and transcriptome integration reveals insights into petals coloration mechanism of three species in Sect. Chrysantha chang.

Not available

S-EPMC11034495 | biostudies-literature

Multifaceted and Intricate Oncogenic Mechanisms of NDRG1 in Head and Neck Cancer Depend on Its C-Terminal 3R-Motif.

Not available

S-EPMC9104279 | biostudies-literature

Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves

Ginkgo leaves are always resources for flavonoids pharmaceutical industry. However, the effect of the elevation and tree age changes on flavonoid biosynthesis have not been detailly explored in Ginkgo leaves. In addition, whether these environmental pressures have similar effects on the biosynthesis...

2020-12-14 | MTBLS962 | MetaboLights

Coal fly ash is a major carbon flux in the Chang Jiang (Yangtze River) basin.

Not available

S-EPMC8166106 | biostudies-literature

Modeling Familial Cancer with iPSC Approaches

In vitro modeling of human disease has recently become feasible with the adoption of induced pluripotent stem cell (iPSC) technology. Here, we established patient-derived iPSCs from an Li-Fraumeni Syndrome (LFS) family and investigated the role of mutant p53 in the development of osteosarcoma (OS). ...

ORGANISM(S): Homo sapiens

2015-04-10 | E-GEOD-58123 | biostudies-arrayexpress

Transcriptomic profiling identifies NLRP3-associated inflammatory signatures in acute radiation enteritis and characterizes the protective effects of Qing Hua Yi Chang formula.

Not available

S-EPMC13623686 | biostudies-literature

Long-term follow-up of papillary and follicular thyroid carcinomas with bone metastasis.

Not available

S-EPMC5344403 | biostudies-literature

Distribution and characteristics of rearranged hopanes in the black shale of the Chang 9 member, the Upper Triassic Yanchang Formation in the Ansai area, Ordos Basin, North China.

Not available

S-EPMC12668623 | biostudies-literature

Preferential lattice expansion of polypropylene in a trilayer polypropylene/polyethylene/polypropylene microporous separator in Li-ion batteries.