Li Jiang J - OmicsDI

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Unknown (18407)
Proteomics (582)
Transcriptomics (103)
Metabolomics (50)
Genomics (40)
Multiomics (16)
Models (1)
Other (1)

Organisms

Homo sapiens (262)
Mus musculus (57)
Drosophila melanogaster (12)
Zea mays (5)
Ovis aries (5)
Escherichia coli (5)
Sus scrofa (4)
Saccharomyces cerevisiae (4)
Bos taurus (3)
Mus (3)
Severe acute respiratory syndrome coronavirus 2 (3)
Danio rerio (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Spalax carmeli (1)
Larimichthys crocea (1)
Nannospalax galili (1)
Pseudopodoces humilis (1)
Sclerotinia sclerotiorum (1)
Streptomyces avermitilis (1)
Brassica oleracea (1)
Branchiostoma belcheri (1)
Drosophila mojavensis (1)
Capra hircus (1)
Cucumis sativus (1)
Bombyx mori (1)
Macaca mulatta (1)
Panonychus citri (1)
Oryza sativa Indica Group (1)
Neisseria meningitidis (1)
Oryza sativa (1)

Repository

pride (281)
iProX (189)
biostudies-arrayexpress (117)
PeptideAtlas (84)
MetaboLights (49)
EGA (26)
PAXDB (17)
MassIVE (7)
PanoramaPublic (3)
BioModels (1)
GNPS (1)
GPMDB (1)
ENA (1)

Tissue

Cell culture (58)
Liver (44)
Liver (21)
Testis (21)
Others (19)
Epithelial cell (17)
Leaf (12)
Brain (11)
Colon (8)
Lung (8)
Blood (7)
Blood plasma (7)
Spleen (7)
Heart (6)
Plasma Non-glyco (5)
Hepatocyte (5)
Kidney (5)
Plant cell (5)
Skin (5)
B cell (4)
Blood cell (4)
Embryonic stem cell (4)
Fungal asexual spore (4)
Monocyte (4)
Root (4)
Whole body (4)
Blood serum (3)
Gill (3)
Kidney cell (3)
Male Reproductive System (2)

Disease

Disease free (12)
Colon cancer (7)
Breast cancer (6)
Acute leukemia (4)
Autism spectrum disorder (2)
Hepatocellular carcinoma (2)
Plasmodium falciparum malaria (2)
Normal (1)
Not Available (1)
Abdominal aortic aneurysm (1)
B-cell lymphoma (1)
Bladder transitional cell carcinoma (1)
Brain cancer (1)
Cardiovascular system disease (1)
Colorectal carcinoma (1)
Endometrial Endometrioid Adenocarcinoma (1)
Esophageal carcinoma (1)
Head and neck squamous cell carcinoma (1)
Inflammation (1)
Leukemia (1)
Long COVID (1)
Lung cancer (1)
Lymphoma (1)
Lysosomal storage disease (1)
Mixed disorder as reaction to stress (1)
Multidrug-resistant tuberculosis (1)
Myopia (1)
Neck carcinoma (1)
Polycystic ovary syndrome (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (281)
Shotgun proteomics (139)
Mass spectrometry (43)
Affinity purification coupled with mass spectrometry proteomics (34)
Bottom-up proteomics (31)
Data-dependent acquisition (19)
Data-independent acquisition (17)
Gel-based experiment (17)
Top-down proteomics (11)
SWATH MS (8)
Mass spectrometry assay (5)
Affinity proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SRM/MRM (4)
All-ion fragmentation (3)
DiaPASEF (3)
Proteogenomics (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Mass spectrometry imaging (2)
Olink affinity proteomics (2)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Glycoproteomics (1)
HDMSE (1)
Immunopeptidomics (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (19)
Liquid Chromatography MS - positive - reverse phase (19)
Liquid Chromatography MS - alternating - reverse phase (6)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Orbitrap Fusion Lumos (3)
LTQ Orbitrap Elite (3)
Gas Chromatography MS - (3)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 2000 (2)
Q Exactive (2)
Liquid Chromatography MS - (2)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
LTQ Orbitrap (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Liquid Chromatography MS - negative – rp (1)
Liquid Chromatography MS - positive – rp (1)
GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
Liquid Chromatography MS - Alternating (LC-MS (Alt)) (1)
Liquid Chromatography MS - alternating – hilic (1)
PEGASUS HT GC-MS (LECO) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Xevo G2 QTOF (Waters) (1)
Bruker (1)
MS Imaging - (1)

Publication Date

2022 (105)
2025 (77)
2024 (77)
2021 (66)
2023 (63)
2026 (51)
2020 (46)
2019 (31)
2012 (28)
2014 (27)
2010 (21)
2015 (19)
2013 (15)
2018 (15)
2016 (13)
2017 (11)
2008 (7)
2007 (6)
2009 (4)
2004 (3)
2005 (2)
2011 (2)
2006 (2)
2002 (1)
2001 (1)

UNIPROT ID/AC

1433B_HUMAN (17)
1433E_HUMAN (17)
1433F_HUMAN (17)
1433G_HUMAN (17)
1433S_HUMAN (17)
1433T_HUMAN (17)
1433Z_HUMAN (17)
2A5A_HUMAN (17)
2A5D_HUMAN (17)
2A5E_HUMAN (17)
2A5G_HUMAN (17)
2AAA_HUMAN (17)
2ABA_HUMAN (17)
2ABD_HUMAN (17)
3BHS2_HUMAN (17)
3BP1_HUMAN (17)
3BP5L_HUMAN (17)
3HAO_HUMAN (17)
3HIDH_HUMAN (17)
3MG_HUMAN (17)
41_HUMAN (17)
4ET_HUMAN (17)
4F2_HUMAN (17)
5NT3A_HUMAN (17)
5NTC_HUMAN (17)
5NTD_HUMAN (17)
6PGD_HUMAN (17)
6PGL_HUMAN (17)
9606.ENSP00000228938 (17)
9606.ENSP00000233596 (17)

ENSEMBL ID

ENSG00000170477 (18)
ENSG00000147251 (7)
ENSG00000247315 (7)
ENSG00000229353 (5)
ENSG00000214897 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16704 (16)
CHEBI:17368 (15)
CHEBI:16708 (14)
CHEBI:17568 (14)
CHEBI:16335 (14)
CHEBI:17748 (13)
CHEBI:16235 (13)
CHEBI:17154 (13)
CHEBI:16919 (13)
CHEBI:17351 (13)
CHEBI:15741 (12)
CHEBI:7916 (12)
CHEBI:15428 (12)
CHEBI:16737 (12)
CHEBI:17596 (12)
CHEBI:30769 (12)
CHEBI:17822 (11)
CHEBI:16610 (11)
CHEBI:15891 (11)
CHEBI:28842 (11)
CHEBI:17509 (11)
CHEBI:16750 (11)
CHEBI:18012 (11)
CHEBI:15354 (11)
CHEBI:15756 (11)
CHEBI:30805 (10)
CHEBI:26271 (10)
CHEBI:17750 (10)
CHEBI:18183 (10)
CHEBI:28875 (10)

Metabolite Name

Hypoxanthine (15)
Adenine (14)
Adenosine (13)
Guanosine (11)
Creatine (11)
Inosine (11)
Uracil (10)
Spermidine (10)
Cytosine (10)
Uridine (10)
Creatinine (10)
Pyridoxine (9)
Choline (9)
Taurine (9)
Pantothenic acid (9)
Guanine (9)
L-Valine (9)
L-Tyrosine (9)
Riboflavin (8)
Cytidine (8)
Thymidine (8)
L-Phenylalanine (8)
Glycine (7)
L-Alanine (7)
Betaine (7)
Benzaldehyde (7)
Piperidine (7)
Ornithine (7)
Allantoin (7)
Nicotinamide (7)

IsPrivate

False (1)

First Public Date

2024 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

15.994915 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (35)
ChIP-chip by tiling array (9)
ChIP-seq (7)
Methylation profiling by high throughput sequencing (5)
RNA-seq of non coding RNA (5)
Methylation profiling by array (4)
Transcription profiling by tiling array (3)
ChIP-chip by array (3)
Unknown experiment type (2)
Other (2)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2025 (3096)
2022 (2584)
2024 (2372)
2023 (2361)
2021 (1898)
2020 (1339)
2019 (1011)
2018 (775)
2017 (675)
2016 (559)
2015 (462)
2026 (452)
2014 (327)
2013 (214)
2012 (142)
2011 (78)
2010 (61)
2009 (47)
2008 (28)
2007 (21)
2006 (11)
2005 (4)
2004 (4)
2002 (1)
2000 (1)
1999 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Tsinghua University, China (4)
West China Second University Hospital, Sichuan University (4)
BGI Research (3)
Children's Hospital of Nanjing Medical University (3)
Sichuan University (3)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
China Agricultural University, College of Animal Science and Technolgoy, Animal genetics and breeding (2)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (2)
College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, Hubei, P. R. China. (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
Division of Infectious Diseases and International Medicine Department of Internal Medicine Morsani College of Medicine University of South Florida (2)
Guangdong Pharmaceutical University (2)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Institute of Oceanology Chinese Academy of Sciences (2)
Institute of genetics and developmental biology (2)
Key Laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, China. (2)
Nanjing Med Univ, State Key Lab Reprod Med, Dept Histol & Embryol, 140 Hanzhong Rd, Nanjing 210029, Jiangsu, Peoples R China. (2)
Professor, University of British Columbia (2)
Professor, Unversity of British Columbia (2)
SJTU (2)
School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, Guangdong, P.R. China. (2)
School of Pharmacy, University of Wisconsin-Madison (2)
Shandong University (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
State Key Laboratory of Reproductive Medicine and Offspring Health, Department of Histology and Embryology, Gusu School, Nanjing Medical University (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis

BACKGROUND: Manchurian walnut (Juglans mandshurica Maxim.) is a tree with multiple industrial uses and medicinal properties in the Juglandaceae family (walnuts and hickories). J. mandshurica produces juglone, which is a toxic allelopathic agent and has potential utilization value...

2022-05-18 | MTBLS3657 | MetaboLights

Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...

ORGANISM(S): Streptomyces avermitilis

2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress

Taxonomic study on the genus Mongoloniscus Verhoeff, 1930 (Isopoda, Agnaridae) from China: morphological and phylogenetic analyses.

Not available

S-EPMC11140264 | biostudies-literature

Comparative analysis of metagenomics between high- and medium-temperature daqu, and microbial succession in Jiang-Nong Jianxiang Baijiu fermentation.

Not available

S-EPMC12482019 | biostudies-literature

Data for the effects of rLj-RGD3 on normal tissues of rats and its location in HeyA8 cells.

Not available

S-EPMC5376250 | biostudies-literature

Transcription profiling of human neural stem cells treated with vehicle (EtOH, 0.01%) and tert-butylhydroquinone (tBHQ, 20A?M) for 24h and assayed with long oligonucleotide arrays verse short oligonucleotide arrays-CTX066

Both in situ synthesized long oligo arrays from Agilent Technologies and short oligo arrays from Affymetrix were used to meausre differential gene expression in RNA samples generated from human neural stem cells treated with vehicle (EtOH, 0.01%) and tert-butylhydroquinone (tBHQ, 20ÂµM) for 24h. For...

ORGANISM(S): Homo sapiens

2008-06-15 | E-GEOD-759 | biostudies-arrayexpress

Eukaryotic plankton species diversity and community structure in the Xiao Jiang River (the primary tributary of Upper Yangtze River), Yunnan.

Not available

S-EPMC11404478 | biostudies-literature

Coal fly ash is a major carbon flux in the Chang Jiang (Yangtze River) basin.

Not available

S-EPMC8166106 | biostudies-literature

A hybrid polymer protective layer with uniform Li⁺ flux and self-adaption enabling dendrite-free Li metal anodes.

Not available

S-EPMC10496765 | biostudies-literature