Li Liang L - OmicsDI

Show results for

Unknown (8477)
Transcriptomics (1567)
Proteomics (283)
Genomics (178)
Metabolomics (136)
Models (4)
Multiomics (4)
Other (1)

Organisms

Homo sapiens (806)
Mus musculus (581)
Drosophila melanogaster (64)
Arabidopsis thaliana (59)
Rattus norvegicus (36)
Saccharomyces cerevisiae (32)
Danio rerio (17)
Streptococcus pneumoniae D39 (16)
Escherichia coli (13)
Macaca mulatta (12)
Zea mays (12)
Bos taurus (12)
Gallus gallus (11)
Oryza sativa (10)
Candida albicans (9)
Sus scrofa (8)
Schizosaccharomyces pombe (7)
Bombyx mori (5)
Caenorhabditis elegans (5)
Vitis vinifera (4)
Oryza sativa Japonica Group (4)
Pseudomonas aeruginosa (4)
Shewanella piezotolerans WP3 (3)
Campylobacter jejuni (3)
Mycobacterium tuberculosis (3)
Staphylococcus aureus (3)
Heterocephalus glaber (3)
Ovis aries (3)
Eukaryota (2)
Mesorhizobium huakuii 7653R (2)

Repository

biostudies-arrayexpress (1716)
pride (135)
MetaboLights (133)
iProX (130)
EGA (38)
MassIVE (7)
BioModels (4)
GNPS (3)
PeptideAtlas (3)
jPOST (2)
PAXDB (1)
ENA (1)

Tissue

Cell culture (38)
Liver (10)
Blood (6)
Blood cell (6)
Brain (6)
Kidney (5)
Whole body (5)
Epithelial cell (4)
Others (3)
Colon (3)
Embryo (3)
HEK-293T cell (3)
Leaf (3)
Testis (3)
Blood plasma (2)
Embryonic stem cell (2)
Heart (2)
Hepatocyte (2)
Lung (2)
Macrophage (2)
Melanocyte (2)
Permanent cell line cell (2)
Posterior silk gland (2)
Primary cell (2)
Spleen (2)
Stem cell (2)
A549-CR cell (1)
B cell (1)
HCT-116 cell (1)
HeLa cell (1)

Disease

Normal (11)
Acute leukemia (3)
Colon cancer (3)
Disease free (3)
Porphyria NOS (2)
Breast cancer (2)
Malaria (2)
Plasmodium falciparum malaria (2)
Lymphoblastic leukemia (1)
Endometrioid carcinoma (1)
Acute HIV-1 infection (1)
Hepatomegaly (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
Locally advanced breast carcinoma (LABC; non-inflammatory) (1)
Wilms' tumor (1)
B. dendrobatidis infection (1)
Diffuse large B-cell lymphoma (1)
No tendon xanthomas (1)
NTN (1)
AIDS-KS, HIV+, nodular (late) stage (1)
"hepatocellular adenoma" (1)
Bladder cancer (1)
WT (1)
Cirrhosis (1)
Head and neck squamous cell carcinoma (1)
Chronic myelogenous leukemia (1)
Prostate cancer (1)
Lung squamous cell carcinoma (1)
Adenocarcinoma (1)
Neurofibromatosis type 1 (1)

Technology Type

Mass Spectrometry (135)
Mass spectrometry (104)
Shotgun proteomics (60)
Mass spectrometry assay (24)
Data-dependent acquisition (19)
Bottom-up proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (15)
Gel-based experiment (10)
Top-down proteomics (9)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
NMR spectroscopy (6)
Data-independent acquisition (4)
Proteogenomics (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Mass spectrometry imaging (2)
Illumina HiSeq 2500 (1)
AB SOLiD System 3.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
DiaPASEF (1)
HDMSE (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (56)
NextSeq 500 (33)
Illumina HiSeq 2000 (20)
Illumina HiSeq 2500 (18)
Illumina HiSeq 4000 (16)
BGISEQ-500 (10)
NextSeq 550 (6)
10x Genomics Chromium Controller (5)
Illumina Genome Analyzer II (4)
Illumina MiSeq (4)
Bio-Rad CFX96 Real-time System (3)
Illumina NovaSeq X (3)
NextSeq 2000 (3)
DNBSEQ-T7 (3)
Illumina HiSeq 1500 (3)
Illumina HiSeq 3000 (3)
BD LSRFortessa (2)
Illumina Genome Analyzer (2)
418 [Affymetrix] (2)
Cell Ranger (1)
Computational analysis using R (Seurat v5.0.0) (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
10X Genomics Chromium Controller Instrument, Thermocycler (PCR machine), Bioanalyzer 2200 (Agilent), Qubit Fluorometer (Thermo Fisher Scientific) (1)
Biological safety cabinet, Water bath (37°C), Centrifuge, 70 µm and 35 µm cell strainers, Countstar Fluorescence Cell Analyzer (1)
Surgical scalpel (1)
Illumina Hi-Seq 2000 (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)

Publication Date

2015 (239)
2014 (237)
2012 (204)
2013 (172)
2010 (169)
2011 (147)
2016 (136)
2008 (94)
2022 (91)
2026 (86)
2021 (82)
2025 (76)
2023 (73)
2009 (70)
2024 (59)
2020 (40)
2019 (39)
2007 (38)
2018 (20)
2017 (20)
2005 (19)
2006 (16)
2004 (5)
2003 (1)
2027 (1)

UNIPROT ID/AC

P36969 (1)
Q08477 (1)
P09960 (1)
P09917 (1)
P24557 (1)
Q9H7Z7 (1)
P35354 (1)
P18054 (1)
P16050 (1)
P04054 (1)
3BHS1_MACMU (1)
9544.ENSMMUP00000000029 (1)
9544.ENSMMUP00000000072 (1)
9544.ENSMMUP00000000075 (1)
9544.ENSMMUP00000000192 (1)
9544.ENSMMUP00000000231 (1)
9544.ENSMMUP00000000270 (1)
9544.ENSMMUP00000000273 (1)
9544.ENSMMUP00000000300 (1)
9544.ENSMMUP00000000331 (1)
9544.ENSMMUP00000000335 (1)
9544.ENSMMUP00000000399 (1)
9544.ENSMMUP00000000400 (1)
9544.ENSMMUP00000000529 (1)
9544.ENSMMUP00000000584 (1)
9544.ENSMMUP00000000645 (1)
9544.ENSMMUP00000000701 (1)
9544.ENSMMUP00000000740 (1)
9544.ENSMMUP00000000788 (1)
9544.ENSMMUP00000000800 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17368 (29)
CHEBI:17568 (28)
CHEBI:16335 (27)
CHEBI:30769 (27)
CHEBI:16708 (26)
CHEBI:17596 (26)
CHEBI:15741 (25)
CHEBI:16704 (25)
CHEBI:30915 (25)
CHEBI:15756 (25)
CHEBI:15428 (24)
CHEBI:28842 (23)
CHEBI:28044 (23)
CHEBI:16027 (23)
CHEBI:6650 (22)
CHEBI:18012 (22)
CHEBI:15843 (13)
CHEBI:34146 (1)
CHEBI:15558 (1)
CHEBI:15632 (1)
CHEBI:28728 (1)
CHEBI:15627 (1)
CHEBI:15554 (1)
CHEBI:15551 (1)
CHEBI:28209 (1)
CHEBI:15646 (1)
CHEBI:15647 (1)
CHEBI:15651 (1)
CHEBI:15628 (1)
CHEBI:15626 (1)

Metabolite Name

Uracil (28)
Adenosine (28)
Hypoxanthine (27)
Guanine (25)
Adenine (24)
Inosine (24)
Creatinine (22)
Creatine (22)
L-Tyrosine (22)
L-Phenylalanine (22)
Thymine (20)
Ornithine (20)
Uric acid (19)
Xanthine (19)
Glycine (18)
Betaine (18)
Pantothenic acid (18)
Choline (18)
Citric acid (18)
Cytosine (18)
Riboflavin (18)
Thymidine (18)
Uridine (18)
L-Proline (17)
L-Histidine (17)
Indole (17)
Xanthosine (17)
Cytidine (17)
L-Tryptophan (16)
Guanosine (16)

IsPrivate

False (4)

First Public Date

2024 (1)

Modelling Approach

Ordinary differential equation model (4)

Study type

Transcription profiling by array (1015)
RNA-seq of coding RNA (252)
ChIP-seq (110)
RNA-seq of coding RNA from single cells (49)
Unknown experiment type (33)
Comparative genomic hybridization by array (31)
ChIP-chip by tiling array (30)
RNA-seq of non coding RNA (30)
Other (23)
Methylation profiling by high throughput sequencing (22)
Methylation profiling by array (17)
RNA-seq of total RNA (14)
ChIP-chip by array (13)
Transcription profiling by tiling array (8)
Genotyping by array (7)
DNA-seq (7)
Animal - High-throughput sequencing (6)
Transcription profiling by RT-PCR (6)
Proteomic profiling by array (5)
Spatial transcriptomics by high-throughput sequencing (4)
4C (3)
MicroRNA profiling by array (3)
CUT&RUN (3)
Transcription profiling by SAGE (2)
ATAC-seq (2)
Single nucleus RNA sequencing (2)
Genotyping by high throughput sequencing (2)
Baseline (1)
Differential (1)
Animal - One-color microarray (1)

Release Date

2025 (1430)
2022 (1250)
2023 (1089)
2024 (1055)
2021 (905)
2020 (638)
2019 (467)
2015 (447)
2018 (418)
2016 (380)
2014 (379)
2017 (327)
2012 (269)
2013 (250)
2026 (229)
2010 (194)
2011 (183)
2008 (101)
2009 (87)
2007 (45)
2006 (20)
2005 (20)
2004 (7)
2003 (2)
2001 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (9)
The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (4)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China. (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Division of Infectious Diseases and International Medicine Department of Internal Medicine Morsani College of Medicine University of South Florida (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Huazhong Agricultural University (2)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical School (2)
Nanjing University (2)
School of Life Sciences, Xiamen University (2)
UT Southwestern Medical Center (2)
West China Second University Hospital, Sichuan University (2)
1 Department of Clinical Nutrition, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China 2 Clinical Research Center, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China (1)
1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China (1)
Case Western Reserve University (1)
Cheeloo College of Medicine, Shandong University, Jinan 250002, PR.China. Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei 230001, China. (1)
Cheeloo College of Medicine, Shandong University, Jinan 250002, PR.China. Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei 230001, China. (1)
Cheeloo Medical College, Shandong University, Jinan, Shandong, China (1)
Children's hospitall of Chongqing medical university China (1)
College of Life Science and Technology, Jinan University, Guangzhou 510632, China; (1)
College of life sciences and technology,Guangxi University (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (1)
Department of Biochemistry and Molecular Biology, Health Science Center, Ningbo University, Fenghua Road No.818, Ningbo, 315211, China. (1)

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L-serine enables reducing the virulence of Acinetobacter baumannii and modulating the SIRT1 pathway to eliminate the pathogen

The emergence of high-virulent Acinetobacter baumannii strains increases the mortality of patients and seriously affects their prognosis, which motivates us to explore novel ways to control such infections. In this study, gas chromatography-mass spectrometry was adopted to explore the me...

2024-01-18 | MTBLS8966 | MetaboLights

L-leucine increases the sensitivity of drug-resistant Salmonella to sarafloxacin by stimulating central carbon metabolism and increasing intracellular reactive oxygen species level (LC-MS positive mode)

The overuse of antibiotics has made public health and safety face a serious crisis. It is urgent to develop new clinical treatment methods to combat drug-resistant bacteria to alleviate the health crisis. The efficiency of antibiotics is closely related to the metabolic state of bacteria. However...

2023-05-02 | MTBLS7711 | MetaboLights

2023-05-02 | MTBLS7713 | MetaboLights

Metabolomic analysis reveals spermatozoa and seminal plasma differences between Duroc and Liang guang Small-spotted pig.

Not available

S-EPMC9853278 | biostudies-literature

Gene Expression Profiling of Peri-implant Healing of PLGA-Li+ Implants Suggests an Activated Wnt Signaling Pathway in vivo.

Bone development and regeneration is associated with the Wnt signaling pathway that, according to literature, can be modulated by lithium ions (Li+). The aim of this study was to evaluate the gene expression profile during peri-implant healing of poly(lactic-co-glycolic acid) (PLGA) implants with in...

ORGANISM(S): Rattus norvegicus

2014-07-21 | E-GEOD-54294 | biostudies-arrayexpress

A Combined Proteomic and Metabolomic Strategy for Allergens Characterization in Natural and Fermented Brassica napus Bee Pollen

Bee pollen is consumed for its nutritional and pharmacological benefits, but it also contains hazardous allergens which has not been identified. Here, we identified 2 potential allergens, glutaredoxin and oleosin-B2, in Brassica napus (B. napus) bee pollen using mass spectrometr...

2022-03-23 | MTBLS3950 | MetaboLights

3C-seq of HT29 cells with CCAT1-L knockdown or scramble knockdown

CCAT1-L is a highly expressed long noncoding RNA located in the colorectal cancer specific super enhance region about 500 kb upstream of MYC gene. Knockdown of CCAT1-L significantly down-regulated interaction frequency between CCAT1 and MYC locus and repress MYC expression, suggesting a long-range c...

ORGANISM(S): Homo sapiens

2014-02-22 | E-GEOD-55261 | biostudies-arrayexpress

Global metabolomics of fireflies (Coleoptera: Lampyridae) explore metabolic adaptation to fresh water in insects

Aquatic insects are well-adapted to freshwater environments, but metabolic mechanisms of such adaptations, particularly to primary environmental factors (e.g., hypoxia, water pressure, dark light and abundant microbes), are poorly known. Most firefly species (Coleoptera: Lampyridae) are terrestri...

2022-10-03 | MTBLS4987 | MetaboLights

Genomic profiling of TP53 and non-TP53 Li-Fraumeni syndrome tumors reveals hits in the p53 and overlapping pathways

Li-Fraumeni syndrome (LFS) is a rare, clinically and genetically heterogeneous inherited cancer syndrome. Most cases are due to mutations in TP53. CHK2 is a minor predisposing locus; we recently mapped a third locus to 1q23. In both TP53 and non-TP53 LFS, there is evidence for risk heterogeneity ...