Li Mi M - OmicsDI

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Unknown (3231)
Models (607)
Transcriptomics (97)
Proteomics (72)
Metabolomics (43)
Genomics (26)
Genomic (15)

Organisms

Homo sapiens (328)
Mus musculus (62)
Mammalia (53)
Saccharomyces cerevisiae (49)
cellular organisms (30)
Rattus (26)
Escherichia coli (21)
Oryctolagus cuniculus (17)
Eukaryota (15)
Arabidopsis thaliana (13)
Cavia porcellus (11)
Drosophila melanogaster (11)
Rattus norvegicus (10)
Canis lupus familiaris (9)
Arabidopsis (6)
Chordata (5)
Halobacterium salinarum (5)
Xenopus laevis (5)
Methanosarcina barkeri (4)
Mycobacterium tuberculosis (4)
Embryophyta (3)
Lactococcus lactis (3)
Murinae (3)
Mus (3)
Trypanosoma brucei (3)
Chlamydomonas reinhardtii (3)
Candidatus Palibaumannia cicadellinicola (2)
Homalodisca vitripennis (2)
Human immunodeficiency virus 1 (2)
Viridiplantae (2)

Repository

BioModels (607)
biostudies-arrayexpress (107)
pride (50)
MetaboLights (43)
iProX (17)
EGA (16)
dbGaP (15)
MassIVE (5)

Tissue

Cell culture (18)
Brain (4)
Fungal asexual spore (4)
Heart (4)
Epithelial cell (3)
Primary cell (3)
Blastopore (2)
Conidium (2)
Fibroblast (2)
Keratinocyte (2)
Kidney (2)
Monocyte (2)
Skin (2)
B cell (1)
Brown adipocyte (1)
Cell suspension culture (1)
Colon (1)
Frond (1)
HEK-293T cell (1)
Ileum (1)
Leaf (1)
Liver (1)
Mammary gland (1)
Oocyte (1)
Pluripotent stem cell (1)
Prefrontal cortex (1)
Prostate epithelium (1)
Prostate gland (1)
Seed (1)
Skin epidermis (1)

Disease

Diabetes mellitus (15)
Parkinson's disease (3)
Cardiovascular system disease (3)
Glioblastoma (3)
Bacterial infectious disease (2)
Calcium metabolism disease (2)
Glucocorticoid-remediable aldosteronism (2)
Heart disease (2)
Human immunodeficiency virus infectious disease (2)
Neurodegenerative disease (2)
Polycythemia due to hypoxia (2)
Type 2 diabetes mellitus (2)
Disease free (2)
Prostate adenocarcinoma (2)
Alzheimer's disease (1)
Amyloidosis (1)
Andersen-Tawil syndrome (1)
Brugada syndrome (1)
Coronary artery disease (1)
Down syndrome (1)
Fatty liver disease (1)
Liver disease (1)
Mature T-cell and NK-cell lymphoma (1)
Neonatal abstinence syndrome (1)
Type 1 diabetes mellitus (1)
Benign nevi (1)
Lung squamous cell carcinoma (1)
Adenocarcinoma (1)
Acute myocardial infarction (1)
Amyotrophic lateral sclerosis (1)

Technology Type

Mass Spectrometry (50)
Mass spectrometry (37)
Shotgun proteomics (28)
Affinity purification coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (6)
Data-dependent acquisition (5)
Gel-based experiment (5)
Mass spectrometry assay (4)
NMR spectroscopy (3)
Data-independent acquisition (3)
SWATH MS (2)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
MSE (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (12)
Liquid Chromatography MS - positive - reverse phase (12)
Gas Chromatography MS - Positive (GC-MS (Positive)) (4)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Liquid Chromatography MS - positive - hilic (3)
Tandem Gas Chromatography MS - positive (3)
Illumina HiSeq 2000 (2)
Q Exactive Plus (2)
TimsTOF Pro (2)
Bruker (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Tandem Gas Chromatography MS - (2)
GeneChip Scanner 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
Agilent 7890 (1)
Agilent5975C (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive - medium polarity - Agilent 6890 GC - LECO Pegasus III TOF MS (LECO) (1)
Leco Pegasus III (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating – hilic (1)

Publication Date

2005 (372)
2024 (255)
2022 (19)
2023 (18)
2012 (17)
2025 (16)
2013 (16)
2010 (14)
2018 (13)
2021 (13)
2011 (11)
2014 (10)
2015 (9)
2009 (9)
2016 (7)
2008 (6)
2007 (6)
2020 (6)
2026 (6)
2017 (4)
2019 (2)

UNIPROT ID/AC

P04637 (9)
Q00987 (9)
P24864 (8)
P01308 (7)
P07663 (7)
P06400 (6)
P24869 (6)
P26309 (6)
P53197 (6)
P00360 (5)
P00549 (5)
P00560 (5)
P00924 (5)
P00950 (5)
P04806 (5)
P06169 (5)
P12709 (5)
P14540 (5)
P16861 (5)
P16862 (5)
P20438 (5)
P24941 (5)
P30283 (5)
P38634 (5)
P00175 (4)
P00330 (4)
P00331 (4)
P00358 (4)
P00359 (4)
P00401 (4)

ENSEMBL ID

ENSBTAG00000000003.4 (1)
ENSBTAG00000000033.3 (1)
ENSBTAG00000000042.2 (1)
ENSBTAG00000000058.4 (1)
ENSBTAG00000000065.4 (1)
ENSBTAG00000000077.4 (1)
ENSBTAG00000000081.4 (1)
ENSBTAG00000000085.4 (1)
ENSBTAG00000000091.1 (1)
ENSBTAG00000000111.4 (1)
ENSBTAG00000000123.3 (1)
ENSBTAG00000000139.4 (1)
ENSBTAG00000000160.4 (1)
ENSBTAG00000000172.4 (1)
ENSBTAG00000000185.4 (1)
ENSBTAG00000000186.3 (1)
ENSBTAG00000000188.2 (1)
ENSBTAG00000000191.3 (1)
ENSBTAG00000000202.3 (1)
ENSBTAG00000000203.3 (1)
ENSBTAG00000000212.3 (1)
ENSBTAG00000000246.4 (1)
ENSBTAG00000000251.4 (1)
ENSBTAG00000000259.4 (1)
ENSBTAG00000000286.4 (1)
ENSBTAG00000000287.3 (1)
ENSBTAG00000000292.4 (1)
ENSBTAG00000000301.3 (1)
ENSBTAG00000000318.4 (1)
ENSBTAG00000000336.3 (1)

CHEBI ID

CHEBI:15422 (39)
CHEBI:16761 (33)
CHEBI:29108 (32)
CHEBI:17754 (27)
CHEBI:33699 (25)
CHEBI:16908 (21)
CHEBI:15361 (19)
CHEBI:15846 (19)
CHEBI:16108 (19)
CHEBI:15996 (18)
CHEBI:17552 (18)
CHEBI:16027 (17)
CHEBI:17794 (17)
CHEBI:17234 (16)
CHEBI:18367 (16)
CHEBI:16001 (15)
CHEBI:16526 (14)
CHEBI:17665 (14)
CHEBI:17835 (14)
CHEBI:18021 (14)
CHEBI:29052 (14)
CHEBI:15343 (13)
CHEBI:16236 (13)
CHEBI:16905 (13)
CHEBI:15351 (12)
CHEBI:16084 (12)
CHEBI:36080 (12)
CHEBI:28013 (11)
CHEBI:15346 (10)
CHEBI:16595 (10)

Metabolite Name

Hypoxanthine (10)
Asparagine (8)
Creatinine (8)
L-Phenylalanine (8)
Guanine (7)
Inosine (7)
Isoleucine (7)
L-Malic acid (7)
Oleamide (7)
Ornithine (7)
Phenylalanine (7)
Proline (7)
Stearic acid (7)
Uracil (7)
Xanthine (7)
Adenine (6)
Arachidic acid (6)
Creatine (6)
Cytosine (6)
D-Glucose (6)
Ethanolamine (6)
Glutamine (6)
Guanosine (6)
L-Histidine (6)
L-Isoleucine (6)
L-Leucine (6)
L-Tyrosine (6)
Leucine (6)
Palmitic acid (6)
Pantothenic acid (6)

IsPrivate

False (607)

Model Flag

Non Kinetic (72)
Non Miriam (14)
Sbml Extended (3)

Submitter Keywords

FROG (2)
Immuno-oncology (1)
TransQST (1)

Modelling Approach

Ordinary differential equation model (546)
Constraint-based model (2)
Delayed differential equation model (2)

Study type

Transcription profiling by array (69)
RNA-seq of coding RNA (9)
ChIP-seq (6)
RNA-seq of non coding RNA (5)
Methylation profiling by array (4)
Methylation profiling by high throughput sequencing (4)
Comparative genomic hybridization by array (3)
ChIP-chip by tiling array (2)
Transcription profiling by SAGE (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2023 (376)
2025 (374)
2021 (356)
2024 (334)
2022 (302)
2020 (293)
2019 (208)
2018 (179)
2017 (159)
2016 (125)
2015 (119)
2014 (102)
2013 (85)
2012 (66)
2026 (58)
2010 (55)
2011 (52)
2009 (35)
2008 (20)
2007 (15)
2006 (9)
2005 (6)
2003 (5)
2004 (3)
1999 (2)

Lab affiliation

Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)
Head of System Biology Lab. at Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Russia (3)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
2011 Collaborative Innovation Center of Tianjin for Medical Epigenetics, Tianjin Key Laboratory of Medical Epigenetics, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Tianjin Medical University, Tianjin 300070, China. (1)
Assistant Professor of Neurology and Angela Dobson and Lyndon Welch Professor of Neurology Department of Neurology | University of Michigan Health System 109 Zina Pitcher Place, 5015 BSRB | Ann Arbor, MI | 48109 (1)
Associate Professor of Chemistry Dow Early Career Professor of Chemistry Associate Director of the Program in Chemical Biology Co-Director the Chemical Biology Interface Training Program University of Michigan 930 N University Ann Arbor, MI 48109 (1)
Binzhou Medical University (1)
Center for Neurodegenerative Science Van Andel Research Institute 333 Bostwick Ave N.E., Rm 5051 Grand Rapids, MI 49503 Tel: 616-234-5262 ext. 5262 | Email: viviane.labrie@vai.org Lab website: http://labrielab.vai.org/ (1)
Center for Neurodegenerative Science, Van Andel Institute, Grand Rapids, MI, 49503 USA (1)
Children's Hospital of Nanjing Medical University (1)
Chongqing Medical University (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department for Neurodegenerative Science Van Andel Institute Grand Rapids, MI (1)
Department of Biochemistry and Molecular Medicine, The George Washington University School of Medicine and Health Science, 2300 Eye Street, N.W., Washington, DC 20037, USA (1)
Department of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, ON, N6A 5C1, Canada (1)
Department of Cardiology and Institute of Vascular Medicine, Peking University Third Hospital; NHC Key Laboratory of Cardiovascular Molecular Biology and Regulatory Peptides; Key Laboratory of Molecular Cardiovascular Science, Ministry of Education; Beijing Key Laboratory of Cardiovascular Receptors Research; Haihe Laboratory of Cell Ecosystem. Beijing 100191, China. (1)
Department of Chemistry and Biomolecular Sciences, University of Ottawa, Canada (1)
Department of Hepatology, Tianjin Second People’s Hospital, Tianjin, China. Tianjin Research Institute of Liver Diseases, Tianjin, China. (1)
Department of Medicine, Section of Dermatology, University of Chicago, Chicago, IL, USA (1)
Department of Pharmacology, University of Michigan Medical School, Ann Arbor, MI (1)
Department of Physiology and Biophysics University of Mississippi Medical Center (1)
Department of Plant Systems Biology, University of Hohenheim, 70593 Stuttgart, Germany (1)
Department of Rheumatology and Inflammation research, Sahlgrenska academy, Gothenburg University, Gothenburg, Sweden (1)
Division of Metabolism, Endocriology & Diabetes and Department of Internal Medicine, University of Michigan, Ann Arbor, MI, 48105, USA (1)
Henan Agricultural University (1)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
Jiangnan University (1)
MSD Singapore (1)
Medicine and Pharmacy Research Center, Binzhou Medical University (1)

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Thrombopoietin (TPO) protects against heart damage induced infarction in rat model

In order to examine the mechanism of TPO on cardiac protection against myocardial infarction damage (MI), we have employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential to delineate the TPO cardioprotective mechanism against infarction. MI ...

ORGANISM(S): Rattus norvegicus

2012-12-01 | E-GEOD-22489 | biostudies-arrayexpress

Mi-2β promotes immune evasion in melanoma by activating EZH2 methylation

For identification of Mi-2β-interacting proteins, B16F10 cells (1 × 108) were collected and washed three times with PBS and lysed in lysis buffer on ice for 30 min. Cell lysates were collected and then isolated over night by anti-Mi-2β magnetic agarose beads. The anti-Mi-2β magnetic agarose beads we...

ORGANISM(S): Mus Musculus

2024-02-18 | PXD049467 |

Gene expression following myocardial infarction with and without stem cell transplantation

Background: Bone marrow-derived multipotent progenitor cell (MPC) transplantation leads to short term functional and bioenergetic improvement in a porcine model of postinfarction Left Ventricular (LV) remodeling despite a low engraftment rate. However, the long term outcome after MPC transplantation...

ORGANISM(S): Sus scrofa

2010-04-12 | E-GEOD-14643 | biostudies-arrayexpress

Targeted Metabolomics Provide Chemotaxonomic Insights of Medicago ruthenica, with Coupled Transcriptomics Elucidating the Mechanism Underlying Floral Coloration.

Not available

S-EPMC9505912 | biostudies-literature

Small RNAs in Chlamydomonas reinhardtii

RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing Small RNAs were prepared from Chlamydomonas reinhardtii total extracts,ligated to a 3' adaptor and a 5' acceptor sequentially, and then RT-PCR amplified. PCR products were reamplified using a pair of 454 cloning pr...

ORGANISM(S): Chlamydomonas reinhardtii

2007-05-15 | E-GEOD-7308 | biostudies-arrayexpress

Expression data from C57BL/6J and MRL/MpJ hearts following acute myocardial infarction

The Murphy Roth Large (MRL) mouse, a strain capable of regenerating right ventricular myocardium, has a high post-myocardial infarction (MI) survival rate compared with C57BL6/J (C57) mice. The biological processes responsible for this survival advantage are unknown. We compared acute post-MI gene e...

ORGANISM(S): Mus musculus

2010-05-27 | E-GEOD-19322 | biostudies-arrayexpress

Fast Li-Ion Conduction in Spinel-Structured Solids.

Not available

S-EPMC8124195 | biostudies-literature

Mi-2β promotes immune evasion in melanoma by activating EZH2 methylation.

Not available

S-EPMC10924921 | biostudies-literature

MI-773, a breaker of the MDM2/p53 axis, exhibits anticancer effects in neuroblastoma via downregulation of INSM1.

Not available

S-EPMC8548782 | biostudies-literature

Aspirin Exposure Reveals Novel Genes Associated with Platelet Function and Cardiovascular Events (outpatient cardiology)

Background: Identifying individuals at heightened cardiovascular risk is a priority for reducing the global burden of cardiovascular disease. Aspirin is widely used to prevent cardiovascular events, though with variable results. Therefore, we hypothesized that aspirin exposure would reveal novel b...

ORGANISM(S): Homo sapiens

2013-12-06 | E-GEOD-38511 | biostudies-arrayexpress

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