Li Ye Y - OmicsDI

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Unknown (8207)
Proteomics (242)
Transcriptomics (39)
Metabolomics (25)
Genomics (23)
Models (2)

Organisms

Homo sapiens (108)
Mus musculus (32)
Rattus norvegicus (4)
Drosophila melanogaster (4)
Oryctolagus cuniculus (2)
Bombyx mori (2)
Ovis aries (2)
Triticum aestivum (2)
Mycolicibacterium smegmatis MC2 51 (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Staphylococcus aureus (2)
unidentified microorganism (1)
Camponotus floridanus (1)
Harpegnathos saltator (1)
Macaca mulatta (1)
Schizosaccharomyces pombe 972h- (1)
Oryza sativa Indica Group (1)
Pseudomonas aeruginosa (1)
Saccharomyces cerevisiae (1)
Bos taurus (1)
Cancer (1)
Candida albicans (1)
Canis lupus (1)
Cervus nippon (1)
Escherichia coli K-12 (1)
Macaca fascicularis fascicularis (1)
Pachycrepoideus vindemmiae (1)
Platycladus orientalis (1)
Rattus rattus (1)
Saccharomyces cerevisiae S288C (1)

Repository

pride (128)
iProX (107)
biostudies-arrayexpress (49)
MetaboLights (25)
EGA (13)
jPOST (3)
BioModels (2)
MassIVE (2)
PAXDB (1)
PeptideAtlas (1)

Tissue

Cell culture (29)
Epithelial cell (7)
Brain (6)
Whole body (6)
Blood (5)
Liver (5)
Heart (4)
Lung (4)
B cell (3)
Cell suspension culture (3)
Embryo (3)
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Permanent cell line cell (3)
Primary cell (3)
Testis (3)
Blood plasma (2)
Colon (2)
Embryonic stem cell (2)
Ovary (2)
Plant cell (2)
Posterior silk gland (2)
Root (2)
Stomach (2)
Brain (1)
Bark (1)
Bladder (1)
HEK-293 cell (1)
HuH-7 cell (1)

Disease

Breast cancer (4)
Disease free (3)
Acute leukemia (2)
Avian influenza (1)
Bacterial infectious disease (1)
COVID-19 (1)
Cardiovascular system disease (1)
Cervical cancer (1)
Colon cancer (1)
Diffuse large B-cell lymphoma activated B-cell type (1)
Diffuse large B-cell lymphoma germinal center B-cell type (1)
Gastric adenocarcinoma (1)
Gastric ulcer (1)
IgA glomerulonephritis (1)
Inflammation (1)
Liver cancer (1)
Lung cancer (1)
Multiple myeloma (1)
Polycystic Kidney (1)
Pulmonary tuberculosis (1)
Severe acute respiratory syndrome (1)
Stomach carcinoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (128)
Shotgun proteomics (59)
Mass spectrometry (21)
Bottom-up proteomics (19)
Data-dependent acquisition (14)
Affinity purification coupled with mass spectrometry proteomics (11)
Gel-based experiment (11)
Top-down proteomics (9)
Data-independent acquisition (7)
NMR spectroscopy (4)
SWATH MS (4)
Affinity proteomics (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Glycoproteomics (1)
Immunopeptidomics (1)
MSE (1)
Mass spectrometry imaging (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - reverse phase (8)
Illumina HiSeq 2000 (4)
Gas Chromatography MS - (4)
Nuclear Magnetic Resonance (NMR) - (3)
Q Exactive (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - positive (1)
Bruker (1)
Xevo G2 QTOF (Waters) (1)
MS Imaging - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
LTQ Orbitrap (1)

Publication Date

2025 (46)
2022 (42)
2024 (41)
2021 (35)
2023 (31)
2026 (25)
2019 (17)
2020 (15)
2010 (14)
2016 (9)
2014 (8)
2013 (7)
2018 (5)
2017 (5)
2015 (4)
2012 (4)
2007 (4)
2005 (2)
2011 (2)
2008 (1)
2003 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:17596 (8)
CHEBI:18237 (7)
CHEBI:18186 (7)
CHEBI:16811 (7)
CHEBI:24898 (7)
CHEBI:27266 (7)
CHEBI:22660 (6)
CHEBI:15428 (6)
CHEBI:6650 (6)
CHEBI:16449 (6)
CHEBI:16704 (6)
CHEBI:15354 (6)
CHEBI:17368 (6)
CHEBI:16450 (5)
CHEBI:26271 (5)
CHEBI:25094 (5)
CHEBI:17234 (5)
CHEBI:25017 (5)
CHEBI:16610 (5)
CHEBI:15741 (5)
CHEBI:28044 (5)
CHEBI:16335 (5)
CHEBI:15891 (5)
CHEBI:15843 (5)
CHEBI:55328 (5)
CHEBI:32816 (5)
CHEBI:30915 (5)
CHEBI:16919 (5)
CHEBI:17895 (5)
CHEBI:17295 (5)

Metabolite Name

Valine (6)
Methionine (6)
Inosine (6)
Hypoxanthine (6)
Leucine (5)
Glycine (5)
Choline (5)
Lysine (5)
Tyrosine (5)
Adenosine (5)
Proline (5)
Isoleucine (5)
Creatine (5)
Lactulose (4)
Uracil (4)
Betaine (4)
Taurine (4)
Arachidonic acid (4)
Alanine (4)
Threonine (4)
Phenylalanine (4)
Glutamine (4)
Uridine (4)
Glutamate (3)
Lactose (3)
Ornithine (3)
L-Arginine (3)
L-Ornithine (3)
Phosphocholine (3)
Taurocholic acid (3)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

RNA-seq of coding RNA (13)
ChIP-chip by tiling array (12)
ChIP-seq (6)
Transcription profiling by array (6)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Other (2)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (1375)
2022 (1173)
2023 (1142)
2024 (1053)
2021 (890)
2020 (615)
2019 (413)
2018 (337)
2017 (268)
2016 (217)
2015 (189)
2026 (188)
2014 (140)
2013 (69)
2012 (65)
2010 (39)
2011 (35)
2009 (12)
2008 (11)
2007 (9)
2006 (5)
2003 (3)
2005 (3)
2004 (3)
2002 (1)
1999 (1)

Lab affiliation

College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (9)
Dalian Institute of Chemical Physics, CAS (3)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Huazhong Agricultural University (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Jinan University (2)
Robert W. Holley Center for Agriculture and Health United States Department of Agriculture Agricultural Research Service (2)
School of Pharmacy, UW-Madison (2)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Zhejiang University (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
Advanced Mass Spectrometry Center, Research Core Facility, Frontiers Scienc Center for Disease-Related Molecular Network, West China Hospital (1)
Affiliated Hospital of Qinghai University, Qinghai , China (1)
Anhui Agricultural University,China (1)
Beijing Chest Hospital (1)
Bone Marrow Transplantation Center, Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
Capital Normal University (1)
Center for Translational Research in Hematological Malignancies, Houston Methodist Neal Cancer Center, Houston Methodist Academic Institute (1)
Chengdu university of traditional chinese medicine (1)
Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC) (1)
College of Pharmacy, Jinan University, Guangzhou 510632, P. R. China (1)
College of Veterinary Medicine, South China Agricultural University, Guangzhou, China (1)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) (1)

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The complete chloroplast genome of the brown alga Saccharina sp. ye-B (Laminariaceae: Phaeophyceae) from Sakhalin, Russia.

Not available

S-EPMC7899685 | biostudies-literature

Two distinct E3 ligases, SCF^FBXL19 and HECW1, degrade thyroid transcription factor 1 in normal thyroid epithelial and follicular thyroid carcinoma cells, respectively.

Not available

S-EPMC6704452 | biostudies-literature

First proteomic analysis of lysine acetylation on extensive functions in Solenopsis invicta Buren

Lysine acetylation (Kac) plays a critical role in the regulation of a great deal of important cellular processes. However, little is known about Kac in Solenopsis invicta, which is one of the 100 most dangerous invasive species in the world. Lysine acetylome in S. invicta was evaluated for the first...

ORGANISM(S): Solenopsis invicta

2020-12-02 | PXD019033 | Pride