Liao R R - OmicsDI

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Unknown (5066)
Transcriptomics (149)
Proteomics (109)
Genomics (44)
Metabolomics (17)
Models (3)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (72)
Mus musculus (58)
Caenorhabditis elegans (9)
Rattus norvegicus (9)
Mycobacterium tuberculosis (5)
Saccharomyces cerevisiae (4)
Bos taurus (3)
Arabidopsis thaliana (3)
Zea mays (2)
Cryptococcus neoformans (2)
Escherichia coli (2)
Danio rerio (2)
Clostridioides difficile 630 (1)
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Canna indica (1)
Bos grunniens (1)
Phaseolus vulgaris (1)
Triticum turgidum subsp. durum (1)
Rhodopseudomonas palustris (1)
Capra hircus (1)
Pinus pinaster (1)
Listeria monocytogenes EGD-e (1)
Streptomyces coelicolor (1)
Citrus sinensis (1)
Schizosaccharomyces pombe (1)
Nicotiana tabacum (1)
Salmo salar (1)
Xanthomonas campestris pv. campestris (1)
Oryza sativa Japonica Group (1)
Drosophila melanogaster (1)

Organisms

Mus musculus (7)
Homo sapiens (6)
Rattus norvegicus (3)
Glossina palpalis (1)
Pseudomonas aeruginosa PA14 (1)
Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (155)
pride (70)
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geo (7)
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Tissue

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Disease

Cervix carcinoma (2)
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Disease free (1)
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Lung cancer (1)
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Rheumatoid arthritis (1)

Technology Type

Mass Spectrometry (70)
Shotgun proteomics (39)
Mass spectrometry (16)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (9)
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SWATH MS (6)
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SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (15)
NextSeq 500 (13)
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Liquid Chromatography MS - negative - reverse phase (6)
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0.7 W LED light (1)
TruSeq Stranded Total RNA with Ribo Zero Human/Mouse/Rat. (1)
CD Small RNA Library Prep Kit (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
NA (1)
- (1)
Ion Torrent Proton (1)
DNBSEQ-G400 (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
LTQ Orbitrap Elite (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)

Publication Date

2021 (28)
2023 (25)
2022 (24)
2024 (23)
2015 (21)
2012 (21)
2025 (18)
2014 (17)
2016 (15)
2010 (14)
2026 (12)
2017 (11)
2013 (11)
2020 (10)
2011 (10)
2019 (9)
2018 (4)
2007 (3)
2009 (2)
2008 (2)
2004 (1)

CHEBI ID

CHEBI:17351 (6)
CHEBI:30769 (6)
CHEBI:17521 (5)
CHEBI:17992 (5)
CHEBI:15741 (5)
CHEBI:6650 (5)
CHEBI:7916 (5)
CHEBI:15891 (5)
CHEBI:48131 (5)
CHEBI:28997 (4)
CHEBI:36090 (4)
CHEBI:33508 (4)
CHEBI:16450 (4)
CHEBI:17822 (4)
CHEBI:16708 (4)
CHEBI:17012 (4)
CHEBI:17859 (4)
CHEBI:18211 (4)
CHEBI:18300 (4)
CHEBI:18050 (4)
CHEBI:16411 (4)
CHEBI:16704 (4)
CHEBI:15354 (4)
CHEBI:17596 (4)
CHEBI:15756 (4)
CHEBI:17368 (4)
CHEBI:27432 (4)
CHEBI:28792 (3)
CHEBI:53488 (3)
CHEBI:5417 (3)

Metabolite Name

Homovanillic acid (4)
N-Acetylneuraminic acid (4)
L-Tryptophan (4)
Uridine (4)
Linoleic acid (3)
Serine (3)
Asparagine (3)
Threonine (3)
Sucrose (3)
Succinic acid (3)
Malic acid (3)
Quinolinic acid (3)
Pantothenic acid (3)
Taurine (3)
Citric acid (3)
Suberic acid (3)
Porphobilinogen (3)
Maltotriose (3)
Deoxyinosine (3)
Azelaic acid (3)
Guanosine (3)
L-Phenylalanine (3)
Inosine (3)
13,14-dihydro-15-keto Prostaglandin D1 (2)
3-Hydroxy-3-methylglutaric acid (2)
Threonic acid (2)
Phytol (2)
Glyceric acid (2)
Galactose (2)
Digalactosylglycerol (2)

First Public Date

2024 (3)
2021 (3)
2020 (3)
2026 (2)
2025 (2)
2022 (2)
2019 (2)
2017 (2)
2023 (1)
2015 (1)
2014 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (2)
EMBL (2)
AbbVie Bioresearch Center (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
BMI, Faculty of Medicine, University of Ottawa, Canada (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA (1)
Centre for Pheromone Technology, Department of Animal Science, Bharathidasan University, Tiruchirappalli, India (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
China Medical University School of Forensic Medicine (1)
Chinese Academy of Sciences University,Center for Excellence in Molecular & Cellular Sciences, State Key Laboratory of Molecular Biology, Institute of Biochemistry & Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yueyang Rd., Shanghai, China 200031 (1)
Deparment of Animal Science, Bharathidasan University, Tiruchirappalli, Tamilnadu, India (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (1)
Department of Biochemistry Virginia Tech Mass Spectrometry Incubator (1)
Department of Biological Sciences, University of Alberta, Canada (1)
Department of Hepatobiliary Surgery, the First Affiliated Hospital(Southwest Hospital) of Army Military Medical University, Chongqing 400038, China. (1)
Department of Immunology and Microbiology Institute of Biomedicine Sahlgrenska Academy University of Gothenburg (1)
Department of Integration of Chinese and Western Medicine, School of Basic Medical Sciences, Peking University, 38 Xueyuan Road, Beijing 100191, People’s Republic of China (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17165, Sweden. (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA (1)
Department of Rheumatology and immunology, Second Xiangya Hospital of Central South University, No.139 Ren Min Middle Road (1)
Department of biochemistry, Zhongshan school of medicine, Sun Yat-sen University,China (1)
Department of biochemistry, microbiology and immunology, Faculty of Medicine, University of Ottawa (1)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (1)
East China Normal University (1)
Erasmus MC (1)
Fujian Agriculture and Forestry University (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Modification

15.994915 (1)
42.010565 (1)
57.021464 (1)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (57)
ChIP-seq (9)
RNA-seq of non coding RNA (7)
Animal - High-throughput sequencing (4)
Methylation profiling by high throughput sequencing (3)
RNA-seq of total RNA (3)
MicroRNA profiling by high throughput sequencing (2)
Comparative genomic hybridization by array (2)
RIP-seq (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Cell line - Single-cell sequencing (1)
Unknown experiment type (1)
Animal - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)

Release Date

2025 (804)
2022 (686)
2023 (646)
2024 (636)
2021 (499)
2020 (334)
2019 (291)
2018 (229)
2017 (228)
2016 (160)
2015 (147)
2014 (123)
2026 (108)
2013 (94)
2012 (77)
2011 (52)
2010 (39)
2009 (27)
2008 (12)
2007 (9)
2006 (5)
2003 (4)
2004 (3)
2005 (2)
2002 (2)
2000 (2)
2001 (1)

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A proposal of Bursaphelenchus uncispicularis Zhuo, Li, Li, Yu & Liao, 2007 as a junior synonyms of B. yongensis Gu, Braasch, Burgermeister, Brandstetter & Zhang, 2006.

Not available

S-EPMC8015284 | biostudies-literature

RasI/R Quorum Sensing System Controls the Virulence of Ralstonia solanacearum Strain EP1.

Not available

S-EPMC9361817 | biostudies-literature

The chloroplasts genomic analyses of Rosa laevigata, R. rugosa and R. canina.

Not available

S-EPMC7020376 | biostudies-literature

Analysis of cytadherence-deficient, GapA-negative Mycoplasma gallisepticum strain R.

Not available

S-EPMC97761 | biostudies-literature

Enhancing the antibacterial activity of antimicrobial peptide PMAP-37(F34-R) by cholesterol modification.

Not available

S-EPMC7607875 | biostudies-literature

Does lineage plasticity enable escape from CAR-T cell therapy? Lessons from MLL-r leukemia.

Not available

S-EPMC8611617 | biostudies-literature

R.palustris: cbbT1 overexpression and cbbT2 overexpression

Transcriptional profiling of Rhodopseudomonas palustris (R. palustris) comparing cbbT1 over-expressing strain with cbbT2 over-expressing strain. Goal was to discriminate the molecular mechanisms between transketolase I (cbbT1) and transketolase II (cbbT2). R.palustris is a purple non-sulfur anoxygen...

ORGANISM(S): Rhodopseudomonas palustris

2014-05-06 | E-GEOD-29310 | biostudies-arrayexpress

Attenuation of Myocardial Dysfunction in Hypertensive Cardiomyopathy Using Non-R-Wave-Synchronized Cardiac Shock Wave Therapy.

Not available

S-EPMC9654370 | biostudies-literature

cellCounts: an R function for quantifying 10x Chromium single-cell RNA sequencing data.

Not available

S-EPMC10365925 | biostudies-literature

SF3B1 mutation and ATM deletion codrive leukemogenesis via centromeric R-loop dysregulation.

Not available

S-EPMC10471171 | biostudies-literature