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ProteomicsEvaluation of library-free strategies for phosphoproteomics and ubiquitinomics data-independent acquisition data
Phosphoproteomics and ubiquitinomics data-independent acquisition MS data is generally analyzed using a DDA spectral library. Performance of different library-free strategies of analyzing phosphoproteomics and ubiquitinomics DIA MS data are not evaluated. In this study, we assess three library-free ...
ORGANISM(S): Homo Sapiens 
PXD037870 |
GenomicsPCR-free library preparation
A method for PCR-free library preparation for sequencing palaeogenomes
PRJEB83706 | ENA
ProteomicsDIA-MS2pep : a library-free framework for comprehensive peptide identifications from DIA-data
We present, a new framework for library-free peptide identification from data-independent acquisition (DIA) data, DIA-MS2pep, containing two main components: 1) MS2 spectrum self-demultiplexing and 2) large precursor mass tolerance database search. DIA-MS2pep empowers the discovery capability of DIA...
ORGANISM(S): Homo Sapiens Escherichia Coli Caenorhabditis Elegans Saccharomyces Cerevisiae 
2022-03-14 | PXD032253 |
GenomicsSystematic calibration of epitranscriptomic atlas using a synthetic modification-free RNA library
Systematic calibration of epitranscriptomic atlas using a synthetic modification-free RNA library
PRJNA634388 | ENA
ProteomicsMaxDIA enables highly sensitive and accurate library-based and library-free data-independent acquisition proteomics (DDA data)
MaxDIA is a universal platform for analyzing data-independent acquisition proteomics data within the MaxQuant software environment. Using spectral libraries, MaxDIA achieves cutting-edge proteome coverage with significantly better coefficients of variation in protein quantification than other softwa...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2021-07-09 | PXD022582 | Pride
Maxquant Benchmark 
ProteomicsMaxDIA enables highly sensitive and accurate library-based and library-free data-independent acquisition proteomics (DIA data)
MaxDIA is a universal platform for analyzing data-independent acquisition proteomics data within the MaxQuant software environment. Using spectral libraries, MaxDIA achieves cutting-edge proteome coverage with significantly better coefficients of variation in protein quantification than other softwa...
ORGANISM(S): Candida albicans (Yeast) Homo sapiens (Human) Escherichia coli 
2021-07-09 | PXD022589 | Pride
Maxquant Benchmark 
GenomicsImproved SALP-seq method for construct next-generation sequencing library of cell free DNA
Improved SALP-seq method for construct next-generation sequencing library of cell free DNA
PRJNA478222 | ENA
GenomicsCricetulus griseus
Genome wide virus free CRISPR library
PRJNA699155 | ENA
GenomicsAllodiplogaster sudhausi Genome
Allodiplogaster sudhausi Genome Pcr Free library
PRJEB23697 | ENA
TranscriptomicsSystematic calibration of epitranscriptomic atlas using a synthetic modification-free RNA library
Recent years has witnessed rapid progress of the field epitranscriptomics. Functional interpretation of epitranscriptome relies on mapping technologies which determine the localization and stoichiometry of various RNA modifications. However, contradictory results are derived from different studies, ...
ORGANISM(S): Homo sapiens Mus musculus 
2021-08-18 | GSE151028 | GEO
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