Liquid biopsy - OmicsDI

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Unknown (2898)
Transcriptomics (634)
Genomics (487)
Proteomics (225)
Metabolomics (91)
Clinical (40)
Methylation profiling (21)
Other (9)
Multiomics (4)
Genomic (2)

Organisms

Homo sapiens (654)
Mus musculus (92)
Rattus norvegicus (23)
Saccharomyces cerevisiae (15)
Bos taurus (14)
Escherichia coli (8)
Sus scrofa (5)
Arabidopsis thaliana (4)
Oncorhynchus nerka (3)
Gallus gallus (3)
Danio rerio (3)
Canis lupus familiaris (3)
Bos indicus (2)
Macaca fascicularis (2)
Ovis aries (2)
Drosophila melanogaster (2)
Bacteria (1)
Schistosoma japonicum (1)
Aptenodytes patagonicus (1)
Cervus elaphus (1)
Papio anubis (1)
Rhizoctonia solani (1)
Xenopus laevis (1)
Felis catus (1)
Helicobacter pylori (1)
Aspergillus fumigatus Af293 (1)
Pseudomonas (1)
Plasmodium falciparum (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)

Organisms

Homo sapiens (205)
Mus musculus (15)
Bos taurus (3)
bird metagenome (1)
Mammalia (1)
Canis lupus familiaris (1)
Malus domestica (1)
fish metagenome (1)
synthetic construct (1)

Repository

biostudies-arrayexpress (564)
ENA (332)
pride (167)
geo (147)
EGA (109)
MetaboLights (91)
MassIVE (26)
iProX (16)
jPOST (8)
PanoramaPublic (4)
dbGaP (2)
PAXDB (2)
EVA (1)
PeptideAtlas (1)

Tissue

Blood plasma (25)
Colon (13)
Urine (12)
Kidney (10)
Blood serum (9)
Epithelial cell (9)
Liver (9)
Skin (8)
Cell culture (7)
Skeletal muscle (7)
Blood (6)
Brain (6)
Lung (6)
Cerebrospinal fluid (4)
Colonic mucosa (4)
Heart (4)
Colon sigmoideum (3)
Extracellular vesicle (3)
Fibroblast (3)
Hepatocyte (3)
Seedling (3)
Testis (3)
Blood cell (2)
Blood platelet (2)
Bone marrow (2)
Cartilage (2)
Duodenum (2)
Embryo (2)
Extracellular exosome (2)
HeLa cell (2)

Disease

Normal (12)
Ovarian tumor (2)
Multiple sclerosis (1)
Fatty liver disease (1)
Aortic aneurysm (1)
HPV positive (1)
Papillary renal cell carcinoma (1)
Responder to preoperative radiotherapy (1)
Acute HIV-1 infection (1)
Hepatomegaly (1)
Epithelioid mesothelioma (1)
ER positive breast cancer (1)
Multibacillary (1)
CUP (1)
Spinal muscular atrophy (1)
Chondroblastoma (1)
Neuroblastoma-undifferentiated (1)
Benign meningioma (1)
Glioma (1)
Kaposi's sarcoma (1)
Dystrophic (1)
AIDS-KS, HIV+, nodular (late) stage (1)
Basal cell carcinoma, Gorlin-Goltz syndrome (1)
Marsh 3 (1)
Follicular lymphoma (1)
Bladder tumour (1)
Systemic sclerosis with diffuse scleroderma (1)
Aortic valve stenosis (1)
Maligant fibrousd histiocytoma post larynx carcinoma (1)
Early-onset idiopathic chronic pancreatitis (1)

Technology Type

Mass Spectrometry (167)
Shotgun proteomics (97)
Mass spectrometry (51)
Bottom-up proteomics (30)
Mass spectrometry assay (29)
Data-dependent acquisition (23)
Data-independent acquisition (13)
NMR spectroscopy (12)
SWATH MS (11)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (7)
Top-down proteomics (6)
Illumina MiSeq (3)
All-ion fragmentation (3)
DiaPASEF (2)
SRM/MRM (2)
ILLUMINA, HiSeq X Ten (1)
ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina HiSeq 2000, ILLUMINA (1)
NMR spectroscopy assay (1)
HDMSE (1)
MSE (1)
Proteogenomics (1)

Instrument Platform

Illumina NovaSeq 6000 (23)
NextSeq 500 (17)
Illumina HiSeq 2000 (11)
Illumina HiSeq 4000 (8)
Illumina HiSeq 2500 (7)
Illumina NovaSeq X (4)
GeneChip Scanner 3000 7G (2)
Generation III Scanner (2)
Illumina MiSeq (2)
Illumina HiSeq 3000 (2)
DNBSEQ Eukaryotic Stranded Transcriptome library preparation- Stranded mRNA Library (1)
MiRNeasy mini Kit (Qiagen, Hilden, Germany) (1)
Surgical hardware (1)
Zephyr G3 NGS workstation (1)
MiRNeasy Micro kit (1)
Radial JawTM (1)
Illumina® (NEB, USA) (1)
Tiangen kit/Trizol (1)
Uterine biosy (1)
Bio-Rad CFX96 Real-time System (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
Illumina TruSeq (1)
Maxwell 16, Promega (1)
HiScan, Illumina (1)
DNA 7500 Bioanalyzer Chips (1)
Bioanalyzer (1)
MouseWG-6_V2_0_R3_11278593_A (1)
MagNA Lyser (1)
Not applicable (1)

Publication Date

2025 (94)
2022 (81)
2026 (76)
2010 (65)
2012 (62)
2024 (60)
2013 (56)
2023 (51)
2016 (49)
2021 (48)
2020 (48)
2019 (46)
2011 (41)
2015 (39)
2014 (34)
2009 (33)
2008 (33)
2007 (33)
2018 (26)
2017 (17)
2006 (11)
2005 (10)
2004 (5)
2003 (3)

UNIPROT ID/AC

1433B_HUMAN (2)
1433E_HUMAN (2)
1433F_HUMAN (2)
1433G_HUMAN (2)
1433T_HUMAN (2)
1433Z_HUMAN (2)
41_HUMAN (2)
4F2_HUMAN (2)
5NTD_HUMAN (2)
6PGD_HUMAN (2)
6PGL_HUMAN (2)
9606.ENSP00000450540 (2)
9606.ENSP00000466775 (2)
A0A087WZE9_HUMAN (2)
A0A087X1N7_HUMAN (2)
A0A096LPE2_HUMAN (2)
A0A0A0MR89_HUMAN (2)
A0A0A0MSP3_HUMAN (2)
A1AG1_HUMAN (2)
A1AG2_HUMAN (2)
A1AT_HUMAN (2)
A1BG_HUMAN (2)
A2AP_HUMAN (2)
A2GL_HUMAN (2)
A2MG_HUMAN (2)
A4_HUMAN (2)
AAPK1_HUMAN (2)
AATC_HUMAN (2)
AATM_HUMAN (2)
ABHEB_HUMAN (2)

CHEBI ID

CHEBI:15428 (28)
CHEBI:15891 (27)
CHEBI:30769 (26)
CHEBI:16737 (25)
CHEBI:16919 (24)
CHEBI:18012 (23)
CHEBI:18186 (22)
CHEBI:28300 (22)
CHEBI:25017 (22)
CHEBI:27266 (22)
CHEBI:16449 (22)
CHEBI:15354 (22)
CHEBI:17368 (22)
CHEBI:22660 (21)
CHEBI:27570 (21)
CHEBI:24898 (21)
CHEBI:17750 (21)
CHEBI:78320 (21)
CHEBI:22653 (20)
CHEBI:26986 (20)
CHEBI:16811 (20)
CHEBI:28044 (20)
CHEBI:16704 (20)
CHEBI:25094 (19)
CHEBI:18237 (19)
CHEBI:17596 (19)
CHEBI:17822 (18)
CHEBI:18132 (18)
CHEBI:17126 (18)
CHEBI:18257 (18)

Metabolite Name

Taurine (21)
Creatinine (19)
Uridine (17)
Creatine (17)
Inosine (17)
Choline (16)
Hypoxanthine (16)
Glycine (15)
Betaine (15)
Adenine (15)
Tyrosine (14)
Methionine (13)
Threonine (13)
Phenylalanine (13)
Glutamine (13)
Cytidine (13)
Xanthine (13)
Histidine (12)
Leucine (12)
AMP (12)
ADP (12)
Arachidonic acid (12)
Histamine (12)
Alanine (12)
Guanosine (12)
Aspartate (11)
Valine (11)
Citrulline (11)
Carnosine (11)
Serotonin (11)

First Public Date

2025 (71)
2024 (44)
2026 (42)
2022 (39)
2023 (33)
2014 (26)
2021 (24)
2020 (24)
2019 (15)
2017 (4)
2015 (4)
2018 (3)
2016 (2)
2013 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study status

Recruiting (18)
Not yet recruiting (7)
Not provided (5)
Completed (4)
Active, not recruiting (3)
Ongoing (1)
Suspended (1)
Terminated (1)

Study type

Transcription profiling by array (404)
RNA-seq of coding RNA (53)
Observational (20)
Interventional (17)
Methylation profiling by array (14)
Comparative genomic hybridization by array (9)
RNA-seq of non coding RNA (9)
MicroRNA profiling by array (8)
RNA-seq of coding RNA from single cells (8)
RNA-seq of total RNA (8)
ChIP-seq (6)
DNA-seq (6)
Animal - One-color microarray (4)
Animal - High-throughput sequencing (4)
Other (4)
Methylation profiling by high throughput sequencing (4)
Human - Two-color microarray (3)
Human - High-throughput sequencing (3)
Unknown experiment type (2)
Proteomic profiling by mass spectrometer (2)
Transcription profiling by RT-PCR (2)
Spatial transcriptomics by high-throughput sequencing (2)
Cell line - Methylation microarray (1)
Baseline (1)
Differential (1)
One-color microarray (1)
Genotyping by array (1)
Hi-C (1)
Single nucleus RNA sequencing (1)
Proteomic profiling by array (1)

Release Date

2022 (478)
2023 (457)
2025 (447)
2021 (405)
2024 (327)
2020 (290)
2019 (194)
2018 (143)
2016 (95)
2017 (88)
2012 (68)
2010 (66)
2026 (64)
2013 (63)
2015 (59)
2011 (45)
2014 (44)
2008 (33)
2007 (33)
2009 (31)
2006 (12)
2005 (11)
2004 (5)
2003 (2)
2000 (1)
1998 (1)

Lab affiliation

Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (2)
Bioanalytics, Leibnizinstitut für analytische Wissenschaften-ISAS-e.V., Germany (2)
Carnegie Mass Spec Facility (2)
Department of Immunology, University of Oslo, Norway (2)
Department of Oncology Pathology, Karolinska Institute, Solna, Sweden (2)
Division of Clinical Medicine, School of Medicine and Population Health, University of Sheffield, Sheffield, UK (2)
Laboratory of Biotechnology of Reproduction, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, 46022 Valencia, Spain (2)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
1)Department of Pediatrics III, University Hospital Essen, Hufelandstrasse 55, 45147 Essen, Germany. 2)Department of General, Visceral, Vascular and Transplant Surgery, Medical Faculty, University Hospital Essen, Hufelandstrasse 55, 45147 Essen, Germany. (1)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
1Institute of Sports Medicine Copenhagen, Department of Orthopedic Surgery, Copenhagen University Hospital – Bispebjerg and Frederiksberg; Copenhagen, Denmark 2Department of Clinical Medicine, University of Copenhagen; Denmark (1)
Aalborg University (1)
Academy of Finland Postdoctoral Researcher EV Core and Research Faculty of Pharmacy, Division of Pharmaceutical Biosciences Viikinkaari 9 00014 University of Helsinki, Finland (1)
Assistant Professor Department of Medicine | Cardiology | Cardiometabolic Precision Medicine Program Department of Systems Biology Herbert Irving Comprehensive Cancer Center | Precision Oncology and Systems Biology Program Data Science Institute | Health Analytics Center Columbia Stem Cell Initiative Columbia University Irving Medical Center 630 West 168th Street, P&S 10-401, New York, NY 10032 (1)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (1)
Associate Professor, Department of Biomedical Sciences,Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
BMC-C12, Rheumatology and Molecular Skeletal Biology Department of Clinical Sciences Lund, Lund University SE-22184 Lund, Sweden (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), Copenhagen, Denmark (1)
Biozentrum Basel, University of Basel, Basel, Switzerland (1)
Byers Eye Institute, Stanford University (1)
CAMS Key Laboratory of Translational Research on Lung Cancer, State Key Laboratory of Molecular Oncology, Department of Medical Oncology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
CIC bioGUNE Proteomics Platform, Bizkaia Tech. Park. Build 800 (1)
Cancer Biology and Epigenetics Group, Research Center of IPO Porto (CI-IPOP), Portuguese Oncology Institute of Porto, Porto, Portugal (1)
Cardiac Proteomics, Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3, 2200 Copenhagen N, Denmark (1)
Carnegie Mass Spectrometry Facility (1)
Cell cycle lab. Institut de Recerca Biomèdica de Lleida (IRB Lleida). (1)
Cellular Proteome Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany. (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)

Location

Germany (8)
Japan (7)
China (5)
Italy (5)
Taiwan (2)
Vietnam (1)
Asia (1)
South Korea (1)
Spain (1)
Belgium (1)
Canada (1)
Netherlands (1)
United States (1)
United Kingdom (1)
Austria (1)
France (1)

Keyword

Liquid biopsy (4)
Irinotecan (4)
Cetuximab (4)
Capecitabine (3)
Leucovorin (3)
CtDNA (2)
Avelumab (2)
Fluorouracil (2)
Levoleucovorin (2)
Oxaliplatin (2)
Oxaliplatinum (1)
CAPE (1)
Vietnam (1)
Adjuvant treatment (1)
TEMIRI (1)
Post-adjuvant (1)
Stage II (1)
Stage III (1)
MGMT (1)
Microsatellite stable (1)
High Risk (1)
Molecular Profiling (1)
Hematological (1)
Next generation sequencing (1)
Surveillance strategies (1)
MFOLFOXIRI (1)
Minimal residual disease (MRD) (1)
Left sided Adenocarcinoma of the Colon (1)
RAS mutated (1)
MFOLFOX6 (1)

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Microvesicle Proteomic profiling of Uterine Liquid Biopsy for Ovarian Cancer Early Detection

High-grade ovarian cancer (HGOC) is the leading cause of mortality from gynecological malignancies, due to diagnosis at a metastatic stage. Current screening options fail to improve mortality due to the absence of early-stage-specific biomarkers. We postulated that a liquid biopsy, such as utero-tub...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-09-19 | MSV000084345 | MassIVE

Multi-parametric liquid biopsy approach

PRJEB39331 | ENA

Retinoblastoma Aqueous Humor Liquid Biopsy Repository

PRJNA887893 | ENA

Retinoblastoma Aqueous Humor Liquid Biopsy Repository

PRJNA887892 | ENA

Current Status and Future Perspectives of Liquid Biopsy in Small Cell Lung Cancer.

Not available

S-EPMC7825645 | biostudies-literature

Liquid Biopsy-Based Single-Cell Transcriptome Profiling Characterizes Heterogeneity of Disseminated Tumor Cells from Lung Adenocarcinoma

To decipher the heterogeneity and distinct molecular signatures of disseminated tumor cells, we profiled the transcriptomes single cells from malignant pleural effusion. RNA-seq was done using the standard 10x chromium v3 chemistry.

ORGANISM(S): Homo sapiens

2020-09-01 | E-MTAB-8530 | biostudies-arrayexpress

The prospects and limitations of liquid biopsy utilization for clinical practice in Taiwan.

Not available

S-EPMC11937291 | biostudies-literature

General practitioners' attitudes towards liquid biopsy as a diagnostic test for advanced lung cancer.

Not available

S-EPMC12799498 | biostudies-literature

Liquid Biopsy for the Diagnosis of Viral Hepatitis, Fatty Liver Steatosis, and Alcoholic Liver Diseases.

Not available

S-EPMC7279404 | biostudies-literature

Reporting of molecular test results from cell-free DNA analyses: expert consensus recommendations from the 2023 European Liquid Biopsy Society ctDNA Workshop.