Liu Chi C - OmicsDI

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Unknown (1252)
Transcriptomics (268)
Genomics (124)
Proteomics (22)
Metabolomics (8)
Multiomics (1)

Organisms

Homo sapiens (175)
Mus musculus (102)
Caenorhabditis elegans (26)
Arabidopsis thaliana (15)
Rattus norvegicus (13)
Saccharomyces cerevisiae (12)
Danio rerio (10)
Schizosaccharomyces pombe (7)
Drosophila melanogaster (7)
Zea mays (5)
Candida albicans (4)
Macaca mulatta (2)
Pseudomonas aeruginosa PAO1 (2)
Oryza sativa Japonica Group (2)
Gallus gallus (2)
Iridovirus (1)
Epinephelus coioides (1)
(Populus tomentosa x Populus bolleana) x Populus tomentosa (1)
Salix matsudana (1)
Boehmeria nivea (1)
Rhodococcus opacus (1)
Trichinella spiralis (1)
Cordyceps militaris (1)
Manihot esculenta (1)
Shigella sonnei (1)
Ichthyophthirius multifiliis (1)
Capra hircus (1)
Leymus cinereus (1)
uncultured bacterium (1)
Salix suchowensis (1)

Repository

biostudies-arrayexpress (388)
pride (20)
MetaboLights (8)
EGA (6)
MassIVE (2)

Tissue

Cell culture (6)
Blood plasma (2)
Epithelial cell (2)
Kidney (2)
B cell (1)
Brain (1)
Embryonic stem cell (1)
Heart (1)
Liver (1)
Lung (1)
Lymph node (1)
Permanent cell line cell (1)
Skin (1)
T cell (1)
Testis (1)
Whole body (1)

Disease

Normal (4)
Breast Carcinoma (1)
Infiltrating ductal carcinoma (1)
Osteosarcoma (1)
Squamous cell carcinoma (1)
Colon cancer (1)
VSV infection (1)
Adenocarcinoma (1)
Cervical cancer (1)
Breast cancer (1)
Chronic kidney disease (1)
Disease free (1)
Systemic lupus erythematosus (1)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (11)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (3)
Bottom-up proteomics (3)
Data-independent acquisition (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (4)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (3)
Illumina NovaSeq 6000 (3)
NextSeq 500 (3)
Scanning hardware (2)
Illumina HiSeq 4000 (2)
Element AVITI (1)
Axon GenePix 4000B scanner (1)
Illumina iScan (1)
GenePix Professional 4200A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Exactive Plus (1)
LTQ Orbitrap Elite (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2010 (64)
2013 (58)
2011 (58)
2012 (57)
2014 (43)
2015 (30)
2016 (21)
2009 (16)
2008 (11)
2017 (10)
2007 (9)
2019 (8)
2024 (6)
2022 (5)
2026 (4)
2023 (4)
2020 (4)
2021 (3)
2025 (3)
2006 (2)
2005 (1)
2018 (1)

CHEBI ID

CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:16750 (4)
CHEBI:16919 (4)
CHEBI:17509 (4)
CHEBI:17562 (4)
CHEBI:17748 (4)
CHEBI:55328 (4)
CHEBI:9410 (4)
CHEBI:15741 (3)
CHEBI:16040 (3)
CHEBI:16259 (3)
CHEBI:16347 (3)
CHEBI:16467 (3)
CHEBI:16737 (3)
CHEBI:16828 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17780 (3)
CHEBI:17858 (3)
CHEBI:17895 (3)
CHEBI:18089 (3)
CHEBI:18176 (3)
CHEBI:21563 (3)
CHEBI:27480 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:30831 (3)
CHEBI:30915 (3)
CHEBI:64489 (3)

Metabolite Name

Adenosine (3)
Cytidine (3)
Glycerophosphocholine (3)
L-Arginine (3)
L-Carnitine (3)
L-Tryptophan (3)
L-Tyrosine (3)
Taurodeoxycholic acid (3)
2-Methylbutyroylcarnitine (2)
5-Hydroxy-L-tryptophan (2)
Arabinosylhypoxanthine (2)
Betaine (2)
Bilirubin (2)
Bis(2-ethylhexyl) phthalate (2)
Creatine (2)
Cytosine (2)
DL-2-Aminooctanoic acid (2)
Guanine (2)
Guanosine (2)
Hippuric acid (2)
Histamine (2)
Indole-3-carboxylic acid (2)
Kynurenic acid (2)
L-Glutamine (2)
L-Histidine (2)
L-Palmitoylcarnitine (2)
L-Valine (2)
LysoPC(15:0) (2)
LysoPC(20:5(5Z,8Z,11Z,14Z,17Z)) (2)
LysoPE(0:0/22:4(7Z,10Z,13Z,16Z)) (2)

Modification

N6 (1)

Study type

Transcription profiling by array (145)
ChIP-seq (115)
RNA-seq of coding RNA (31)
ChIP-chip by tiling array (27)
ChIP-chip by array (11)
MicroRNA profiling by array (11)
Other (10)
Methylation profiling by array (7)
RNA-seq of coding RNA from single cells (5)
RNA-seq of non coding RNA (5)
Unknown experiment type (3)
Transcription profiling by tiling array (3)
Genotyping by array (3)
Comparative genomic hybridization by array (3)
Methylation profiling by high throughput sequencing (3)
Human - One-color microarray (2)
Plant - One-color microarray (1)
CUT&RUN (1)

Release Date

2025 (192)
2022 (184)
2023 (163)
2024 (150)
2021 (130)
2020 (100)
2013 (76)
2019 (70)
2012 (69)
2011 (66)
2010 (66)
2014 (64)
2015 (63)
2016 (62)
2017 (57)
2018 (54)
2026 (24)
2009 (18)
2008 (16)
2007 (9)
2006 (3)
2005 (2)
2004 (1)
2003 (1)

Lab affiliation

Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
1Department of Chemistry, Georgia State University, Atlanta, GA (1)
2The Key Laboratory of Integrated Crop Pest Management of Shandong Province, College of Agronomy and Plant Protection, Qingdao Agricultural University, Qingdao 266109, China (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
Department of Andrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080, China (1)
Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT, USA (1)
Department of Pharmacology Cancer Biology Institute Yale University School of Medicine (1)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (1)
Institute of Computing Technology, CAS (1)
National Glycoengineering Research Center, Shandong University, Qingdao, Shandong, China (1)
Precision Medicine Research Center, School of Pharmacy, Binzhou Medical University, Yantai, Shandong Province, 264003, PR China. (1)
School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (1)
School of Pharmaceutical Sciences Tsinghua University (1)
Sun Yat-Sen University (1)
The Hong Kong Polytechnic University (1)

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Z-Ligustilide Induces c-Myc-Dependent Apoptosis via Activation of ER-Stress Signaling in Hypoxic Oral Cancer Cells.

Not available

S-EPMC9043595 | biostudies-literature

Age-associated methylation change of CHI promoter in herbaceous peony (Paeonia lactiflora Pall).

Not available

S-EPMC6137250 | biostudies-literature

Transcriptomic analysis of grape (Vitis vinifera L.) leaves exposed to ultraviolet C radiation

Solar ultraviolet C（UV-C）radiation reaching the Earth’s surface is little due to the filtering effects of the stratospheric ozone layer. At present, artificial UV-C irradiation is utilized for different biological processes. Grape is a major fruit crop around the world. Research has shown that UV-C ...

ORGANISM(S): Vitis vinifera

2014-11-15 | E-GEOD-62315 | biostudies-arrayexpress

The Predictive Role of Hepatitis B Biomarkers on HBV Reactivation following Direct-Acting Antiviral Therapy in HBV/HCV Coinfected Patients.

Not available

S-EPMC9414824 | biostudies-literature

High resolution mapping of DNA replication origins in human genome

Because of the lack of information, regulation of DNA replication initiation in mammals is still poorly understood. In order to identify general rules, we have mapped replication origins along 1% of the human genome in HeLa cells. We found large gene-poor regions lacking origin and G+C rich regions ...

ORGANISM(S): Homo sapiens

2010-05-18 | E-GEOD-10217 | biostudies-arrayexpress

Nuclear Magnetic Resonance-Based Metabolomics Approach to Evaluate the Prevention Effect of Camellia nitidissima Chi on Colitis-Associated Carcinogenesis.

Not available

S-EPMC5504182 | biostudies-literature

Integrated omics studies delineate the formation and dynamics of lipid droplets in Rhodococcus opacus PD630 for biofuel feedstock

Purpose: To delineate mechanisms underlying lipid storage in LDs, we compared the transcriptomes of cells cultivated under three lipid-accumulating conditions. Methods: PD630 mRNA profiles of 3 different conditions (normal condition and LDs acculation conditions) were generated by deep sequencing, u...

ORGANISM(S): Rhodococcus opacus

2013-11-04 | E-GEOD-42381 | biostudies-arrayexpress

The effect of Tai Chi exercise on motor function and sleep quality in patients with stroke: A meta-analysis.

Not available

S-EPMC6626210 | biostudies-literature

Organic anion-transporting polypeptide 1B3 as a dual reporter gene for fluorescence and magnetic resonance imaging.

Not available

S-EPMC5892727 | biostudies-literature

WNT1-inducible signaling pathway protein 1 activation through C-X-C motif chemokine ligand 5/C-X-C chemokine receptor type 2/leukemia inhibitory factor/leukemia inhibitory factor receptor signaling promotes immunosuppression and neuroendocrine differentiation in prostate cancer.

Not available

S-EPMC11338985 | biostudies-literature