Liu Hsu H - OmicsDI

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Unknown (493)
Metabolomics (12)
Proteomics (11)
Transcriptomics (9)
Genomics (3)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (15)
Mus musculus (3)
Arabidopsis thaliana (3)

Organisms

Mus musculus (1)

Repository

MetaboLights (11)
biostudies-arrayexpress (10)
pride (7)
MassIVE (2)
BioModels (1)
geo (1)
GNPS (1)
jPOST (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (3)
Plant cell (2)
Seedling (2)
Epithelial cell (1)
HeLa cell (1)
Neutrophil (1)
Saliva (1)

Disease

Bacterial infectious disease (1)

Technology Type

Mass spectrometry (10)
Mass Spectrometry (7)
Shotgun proteomics (5)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative - reverse phase (2)
454 GS 20 (1)
Illumina Genome Analyzer IIx (1)
LTQ FT (1)
MaXis (1)
LTQ Orbitrap Elite (1)
Q Exactive Plus (1)
LMJ-SSP/ESI MS (Imaging MS) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
MALDI MS (Imaging MS) (1)

Publication Date

2023 (11)
2015 (4)
2010 (4)
2021 (4)
2024 (2)
2012 (2)
2019 (2)
2025 (2)
2009 (1)
2007 (1)
2018 (1)
2026 (1)

UNIPROT ID/AC

O00187 (1)
P01024 (1)
P02741 (1)
P04003 (1)
P06681 (1)
P0C0L4 (1)
P0C0L5 (1)
Q15485 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:16908 (2)
CHEBI:173703 (2)
CHEBI:17561 (2)
CHEBI:182695 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:2376 (2)
CHEBI:27432 (2)
CHEBI:27732 (2)
CHEBI:27997 (2)
CHEBI:28619 (2)
CHEBI:30769 (2)
CHEBI:30797 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:18132 (1)
CHEBI:506227 (1)
CHEBI:10049 (1)
CHEBI:10093 (1)
CHEBI:101085 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Caffeine (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)
(12aS)-9-{[2-(tert-butylamino)-1-hydroxyethylidene]amino}-4,7-bis(dimethylamino)-5,10,12,12a-tetrahydroxy-1,3,11-trioxo-1,2,3,4,4a,5,5a,6,11,12a-decahydrotetracene-2-carboximidic acid (1)
(13-{[5-(acetyloxy)-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,6,6,11,15-pentamethyl-14-(6-methylhept-5-en-2-yl)-5-[(3,4,5-trihydroxyoxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl)oxidanesulfonic acid (1)
(13R)-5-(3,4-dihydroxyphenyl)-6,9,17,19,21-pentahydroxy-13-(4-hydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2(11),3(8),5,9,15,17,19-heptaen-7-one (1)
(15Z)-Octadec-15-en-9,11,13-triynoic acid (1)
(1R)-1,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-3-hydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1R,16Z,24E,26E,28Z)-1,18,26,27-tetrahydroxy-19,30-dimethoxy-12-[1-(3-methoxy-4-oxocyclohexyl)propan-2-yl]-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)

IsPrivate

False (1)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (6)
Genotyping by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2021 (52)
2023 (50)
2025 (49)
2022 (46)
2020 (41)
2019 (37)
2024 (35)
2015 (31)
2018 (26)
2017 (26)
2016 (24)
2013 (17)
2012 (14)
2014 (14)
2010 (11)
2011 (11)
2026 (7)
2009 (6)
2008 (4)
2007 (1)
1994 (1)

Lab affiliation

Carnegie Mass Spectrometry Facility (2)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (1)
Department of Medical Biotechnology and Laboratory Science, College of Medicine, Chang Gung University, Taiwan (1)
Department of Pathology, Dana-Farber/Harvard Cancer Center, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA. (1)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China (1)

Tags

xref:PubMed:22561152 (1)

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Down-regulation of ATF1 leads to early neuroectoderm differentiation of human embryonic stem cells by increasing the expression level of SOX2.

Not available

S-EPMC6704446 | biostudies-literature

Liu2011_Complement_System

Model of the Complement System This is the continuous deterministic (ODE) model of the complement system described in the article: Computational and Experimental Study of the Regulatory Mechanisms of the Complement System. Liu B, Zhang J, T...

2024-09-02 | BIOMD0000000303 | BioModels

Substrate-induced changes in domain interaction of vacuolar H⁺-pyrophosphatase.

Not available

S-EPMC4294485 | biostudies-literature

Distance variations between active sites of H(+)-pyrophosphatase determined by fluorescence resonance energy transfer.

Not available

S-EPMC2911311 | biostudies-literature

Identification of essential lysines involved in substrate binding of vacuolar H+-pyrophosphatase.

Not available

S-EPMC3069399 | biostudies-literature

The (+)-Brevipolide H Displays Anticancer Activity against Human Castration-Resistant Prostate Cancer: The Role of Oxidative Stress and Akt/mTOR/p70S6K-Dependent Pathways in G1 Checkpoint Arrest and Apoptosis.

Not available

S-EPMC7355498 | biostudies-literature

Investigation of the impact of Globo-H expression on the progression of gastric cancer.

Not available

S-EPMC10408484 | biostudies-literature

Using brain cell type-specific protein interactomes to interpret genetic data in schizophrenia

Hsu Y, Nacu E, Liu R, Kim A, Tsafou K, Petrossian N, Crotty W, Suh JM, Pintacuda G, Riseman J, Martin J, Malolepsza E, Li T, Singh T, Ge T, Egri SB, Tanenbaum B, Stanclift CR, Apffel AM, Schizophrenia Working Group of the Psychiatric Genomics Consortium, Stanley Global Asia Initiatives, Carr SA, Sch...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-05-25 | MSV000087514 | MassIVE

Distinct mutation profile and prognostic relevance in patients with hypoplastic myelodysplastic syndromes (h-MDS).

Not available

S-EPMC5325355 | biostudies-literature

Influence of race and age in sleep duration and mortality relationship among adults in the United States: results from the 2004 NHIS-NDI record linkage study.

Not available

S-EPMC11408436 | biostudies-literature

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