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TranscriptomicsWithin and between-species transcript profiling during cotton fibre development
A gene expression profiling study on two major cotton species that are cultivated for fibre, Gossypium hirsutum (L.) and Gossypium barbadense (L.), at different stages during fibre development using a printed cDNA microarray was undertaken to identify potential candidate genes for manipulation to im...
ORGANISM(S): Gossypium barbadense 
2010-05-16 | E-GEOD-10363 | biostudies-arrayexpress
TranscriptomicsGlobal gene expression analysis of waterlogging stressed Cotton root and leaf tissue
Global gene expression was compared between roots of cotton plants (variety Sicot 71) flooded for 4 hours and roots of unflooded cotton plants. Global gene expression was also compared between leaves of cotton plants (variety Sicot 71) flooded for 24 hours and leaves of unflooded cotton plants. Wate...
ORGANISM(S): Gossypium hirsutum 
2010-05-17 | E-GEOD-16467 | biostudies-arrayexpress
TranscriptomicsGlobal gene expression analysis of Arabidopsis Col-0 under normal and low oxygen conditions
Global gene expression was compared between root RNA samples from three-week-old Arabidopsis Col-0 plants subjected to 0.1% oxygen (balance nitrogen) or ambient atmospheric conditions. Three-week-old Arabidopsis seedlings (4-6 leaves) of ecotype Col-0 were used. Two biological replicates were used f...
ORGANISM(S): Arabidopsis thaliana 
2010-05-07 | E-GEOD-21504 | biostudies-arrayexpress
Transcriptomicsaffy_cotton_2011_12 - Comparative transcriptional profiling of cotton fibers in Gossypium hirsutum and Gossypium barbadense using EST pyrosequencing and microarray hybridization
affy_cotton_2011_12 - affy_cotton_2011_12 - In this study we characterized the fiber transcriptomes of the two species, Gossypium hirsutum and Gossypium barbadense that were parental genotypes of a RIL mapping population used previously for phenotypic QTL and expression QTL mapping., We used 454 dee...
ORGANISM(S): Gossypium hirsutum 
2012-10-03 | E-GEOD-36876 | biostudies-arrayexpress
TranscriptomicsExpression data from 0dpa ovules of GhHD-1 silenced and over-expression transgenic cotton lines
Cotton (Gossypium hirsutum L.) fibres are specialised trichomes that extend from the seedcoat. To date only a few genes directly involved in the differentiation of these epidermal cells have been identified. We have identified a HD-ZIP transcription factor, GhHD-1, expressed in trichomes and early f...
ORGANISM(S): Gossypium hirsutum 
2012-05-31 | E-GEOD-36021 | biostudies-arrayexpress
TranscriptomicsExpression analysis of Arabidopsis thaliana wild-type Col-0 and selected RNA silencing mutant plants
Investigation of whole genome gene expression level changes in several Arabidopsis thaliana mutants (nrpd1, nrpe1, ros1 dml2 dml3) compared to wild-type Col-0. The mutants analyzed in this study are further described in Le et al. 'DNA demethylases target promoter transposable elements to positively...
ORGANISM(S): Arabidopsis thaliana 
2014-08-20 | E-GEOD-60508 | biostudies-arrayexpress
Transcriptomicsaffy_cotton_2011_12-Comparative transcriptional profiling of cotton fibers in Gossypium hirsutum and Gossypium barbadense using EST pyrosequencing and microarray hybridization
affy_cotton_2011_12 - affy_cotton_2011_12 - In this study we characterized the fiber transcriptomes of the two species, Gossypium hirsutum and Gossypium barbadense that were parental genotypes of a RIL mapping population used previously for phenotypic QTL and expression QTL mapping., We used 454 dee...
ORGANISM(S): Gossypium hirsutum 
2013-07-01 | E-GEOD-43528 | biostudies-arrayexpress
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