Localisation - OmicsDI

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Unknown (2463)
Transcriptomics (1245)
Genomics (729)
Proteomics (499)
Other (40)
Metabolomics (26)
Models (7)
Methylation profiling (5)
Multiomics (3)
Clinical (2)

Organisms

Homo sapiens (573)
Mus musculus (402)
Caenorhabditis elegans (307)
Saccharomyces cerevisiae (132)
Drosophila melanogaster (72)
Arabidopsis thaliana (70)
Rattus norvegicus (39)
Schizosaccharomyces pombe (24)
Danio rerio (12)
Gallus gallus (9)
Bos taurus (7)
Xenopus laevis (6)
Vibrio cholerae (6)
Zea mays (6)
Ciona intestinalis (5)
Sus scrofa (5)
Plasmodium falciparum (5)
Escherichia coli K-12 (4)
Plasmodium falciparum 3D7 (4)
Staphylococcus aureus (4)
Allochromatium vinosum DSM 180 (3)
Oryza sativa Indica Group (3)
Oryza sativa (3)
Bacillus subtilis (3)
Saccharomyces cerevisiae W303 (2)
Helianthus annuus (2)
Phaeodactylum tricornutum (2)
Plasmodium berghei (2)
Entamoeba histolytica (2)
Eukaryota (1)

Organisms

Homo sapiens (94)
Mus musculus (47)
Saccharomyces cerevisiae (10)
Drosophila melanogaster (7)
Arabidopsis thaliana (7)
Toxoplasma gondii RH (3)
Schizosaccharomyces pombe (3)
Gallus gallus (3)
Caenorhabditis elegans (2)
Danio rerio (2)
Rattus norvegicus (2)
Plasmodium falciparum (2)
Sulfolobus acidocaldarius DSM 639 (1)
Theileria parva (1)
Plasmodium falciparum 3D7 (1)
Cricetulus griseus (1)
Apopellia endiviifolia (1)
Lathyrus oleraceus (1)
Francisella sp. (1)
wastewater metagenome (1)
Mus (1)
Saccharomyces cerevisiae BY4741 (1)
uncultured bacterium (1)
Escherichia coli (1)
Pseudomonas aeruginosa (1)
Staphylococcus aureus (1)
Bos taurus (1)

Repository

biostudies-arrayexpress (1531)
ENA (276)
pride (256)
geo (180)
MassIVE (157)
jPOST (47)
MetaboLights (26)
EGA (17)
GPMDB (15)
iProX (14)
PAXDB (10)
PeptideAtlas (8)
PanoramaPublic (7)
BioModels (6)
Cell Collective (1)

Tissue

Cell culture (74)
Epithelial cell (19)
Permanent cell line cell (15)
Brain (11)
Fibroblast (9)
Embryonic stem cell (6)
HeLa cell (6)
Liver (6)
Blood (6)
Plant cell (5)
Stem cell (5)
Leaf (5)
Skeletal muscle (4)
Primary cell (4)
B cell (4)
Pancreas (3)
Testis (3)
Whole body (3)
Hepatocyte (3)
Lung (3)
T cell (3)
Breast (2)
Epithelial cell of lung (2)
Hippocampus (2)
Skin (2)
Diploid cell (2)
Early embryonic cell (2)
Oocyte (2)
Leukocyte (2)
Others (1)

Disease

Not Available (15)
Disease free (11)
Breast cancer (8)
Trypanosomiasis (7)
Normal (5)
Malaria (5)
Obesity (4)
Neuroblastoma (3)
Parkinson's disease (3)
Head and neck squamous cell carcinoma (2)
Bone osteosarcoma (2)
Amyotrophic lateral sclerosis type 1 (2)
Non-small cell lung carcinoma (2)
Plasmodium falciparum malaria (2)
Cervix carcinoma (2)
Melanoma (2)
Hepatomegaly (1)
Colorectal cancer (1)
Multiple congenital malformation (1)
Non-diabetic (1)
Acute Myeloid Leukemia (1)
Unaffected (1)
Hypertensive (1)
Glioblastoma (1)
None (1)
Adenocarcinoma (1)
Central nervous system cancer (1)
Fecal and urinary incontinence after surgery in the lesser pelvis/ low anterior resection (1)
Colorectal Neoplasms (1)
Breast Carcinoma (1)

Technology Type

Mass Spectrometry (256)
Shotgun proteomics (119)
Bottom-up proteomics (65)
Affinity purification coupled with mass spectrometry proteomics (50)
Data-dependent acquisition (35)
Mass spectrometry (22)
Gel-based experiment (22)
Data-independent acquisition (19)
SWATH MS (12)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Mass spectrometry assay (4)
SRM/MRM (3)
Top-down proteomics (3)
DiaPASEF (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Affinity proteomics (1)
HDMSE (1)

Instrument Platform

NextSeq 500 (34)
Illumina NovaSeq 6000 (21)
Illumina HiSeq 2000 (18)
Illumina HiSeq 4000 (17)
Illumina HiSeq 2500 (13)
Illumina Genome Analyzer IIx (5)
Illumina MiSeq (4)
NextSeq 2000 (3)
NextSeq 550 (3)
Maxwell RSC Instrument (2)
Bio-Rad CFX96 Real-time System (2)
Conviron controlled environment chamber (2)
Affymetrix GeneChip Scanner 3000 7G (2)
Agilent G2565AA and G2565BA Microarray Scanner (2)
Illumina Genome Analyzer II (2)
MinION (2)
Coulter Automated Workstation Biomek i7 Hybrid (1)
RNeasy 96-well plate kit (1)
NextSeq 500, 75 bp single end lane (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
Leica Biosystems Cryostat (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
Cutadapt, STAR (1)
TruSeq Stranded mRNA Sample Prep Kit (Illumina) (1)
BD InFlux Cytometer (Becton-Dickinson) (1)
Covaris S220 (1)
ScanArray 4000 [PerkinElmer] (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Jencons Millennium CO2 Incubator (1)

Publication Date

2013 (305)
2010 (225)
2012 (163)
2011 (162)
2014 (159)
2015 (139)
2016 (138)
2024 (117)
2025 (98)
2023 (98)
2008 (87)
2020 (78)
2022 (65)
2021 (63)
2019 (63)
2009 (60)
2026 (54)
2018 (41)
2017 (34)
2007 (29)
2006 (26)
2005 (11)
2004 (4)
2003 (1)

UNIPROT ID/AC

MBD3_MOUSE (6)
10090.ENSMUSP00000113068 (6)
KXDL1_MOUSE (6)
GSTP2_MOUSE (6)
E9Q6E5_MOUSE (6)
NHP2_MOUSE (6)
RL18A_MOUSE (6)
CALM1_MOUSE (6)
UIF_MOUSE (6)
PAF1_MOUSE (6)
CATIN_MOUSE (6)
WDR33_MOUSE (6)
F6S4B9_MOUSE (6)
HMGA1_MOUSE (6)
Q9EQC8_MOUSE (6)
TRA2B_MOUSE (6)
PDIP3_MOUSE (6)
ZBED6_MOUSE (6)
SMCA2_MOUSE (6)
D3YWX2_MOUSE (6)
ARI1A_MOUSE (6)
SRS10_MOUSE (6)
CTCF_MOUSE (6)
10090.ENSMUSP00000136358 (6)
P5CR3_MOUSE (6)
10090.ENSMUSP00000048857 (6)
10090.ENSMUSP00000089346 (6)
SBP2_MOUSE (6)
P60568 (2)
P01137 (1)

ENSEMBL ID

ENSDARG00000063559 (1)
ENSDARG00000090714 (1)
ENSDARG00000051873 (1)
ENSDARG00000061100 (1)
ENSDARG00000035506 (1)
ENSDARG00000024112 (1)
ENSDARG00000057714 (1)
ENSDARG00000010347 (1)
ENSDARG00000059411 (1)
ENSDARG00000036809 (1)
ENSDARG00000035565 (1)
ENSDARG00000029952 (1)
ENSDARG00000045414 (1)
ENSDARG00000020270 (1)
ENSDARG00000070844 (1)
ENSDARG00000077782 (1)
ENSDARG00000052942 (1)
ENSDARG00000075754 (1)
ENSDARG00000051853 (1)
ENSDARG00000077244 (1)
ENSDARG00000032218 (1)
ENSDARG00000063167 (1)
ENSDARG00000069937 (1)
ENSDARG00000063433 (1)
ENSDARG00000044642 (1)
ENSDARG00000016048 (1)
ENSDARG00000004115 (1)
ENSDARG00000006577 (1)
ENSDARG00000019236 (1)
ENSDARG00000059123 (1)

CHEBI ID

CHEBI:16610 (5)
CHEBI:18012 (5)
CHEBI:32816 (5)
CHEBI:30769 (5)
CHEBI:33942 (4)
CHEBI:30805 (4)
CHEBI:16113 (4)
CHEBI:16040 (4)
CHEBI:17234 (4)
CHEBI:29864 (4)
CHEBI:17562 (4)
CHEBI:16750 (4)
CHEBI:25017 (4)
CHEBI:15428 (4)
CHEBI:17148 (4)
CHEBI:15741 (4)
CHEBI:6650 (4)
CHEBI:28044 (4)
CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:30754 (3)
CHEBI:17992 (3)
CHEBI:66857 (3)
CHEBI:64516 (3)
CHEBI:64517 (3)
CHEBI:66849 (3)
CHEBI:26984 (3)
CHEBI:33508 (3)
CHEBI:17822 (3)
CHEBI:16927 (3)

Metabolite Name

Spermidine (4)
Leucine (3)
Glycine (3)
Mannitol (3)
Putrescine (3)
Succinic acid (3)
Fumaric acid (3)
Isocitric acid (3)
Lysine (3)
Tyrosine (3)
Adenosine (3)
Cytosine (3)
Proline (3)
Phenylalanine (3)
Isoleucine (3)
Glutamine (3)
Glucose (3)
Aspartic acid (3)
Urea (3)
PC(P-38:5) (2)
PE(P-38:3) (2)
PE(P-38:5) (2)
PC(P-34:1) (2)
PC(P-34:2) (2)
PC(P-32:0) (2)
PE(P-38:4) (2)
PC(O-40:5) (2)
PC(O-40:4) (2)
PC(O-36:2) (2)
5-Hydroxy-tryptophan (2)

First Public Date

2024 (41)
2025 (39)
2026 (34)
2023 (23)
2022 (22)
2020 (21)
2019 (17)
2014 (17)
2021 (13)
2016 (13)
2017 (11)
2013 (11)
2018 (8)
2015 (5)
2010 (1)

Modelling Approach

Ordinary differential equation model (3)
Generalized logical model (1)

Study status

Recruiting (2)

Lab affiliation

CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (6)
Department of Molecular Ecology MPI for Marine Microbiology Celsiusstr. 1 D-28359 Bremen Germany (5)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (3)
Department of Microbiology and Molecular Medicine, CMU, University of Geneva, Geneva, Switzerland (3)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
University of Edinburgh (3)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 82 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
Crick-GSK LinkLabs, UK (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia (2)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (2)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (2)
Max Delbrueck Center for Molecular Medicine (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
Lanzhou Veterinary Research Institute (2)
Institut für Experimentelle und Klinische Pharmakologie und Toxikologie, PZMS, Universität des Saarlandes, Geb. 46, 66421 Homburg, Germany (2)
MRC Toxicology Unit, University of Cambridge (2)
The University of Melbourne (2)
Functional Proteomics, ICR (2)
Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
Institut Pasteur, Université Paris Cité, Trypanosome Molecular Biology, Department of Parasites and Insect Vectors, F-75015, Paris, France (1)
Centre for Proteome Research Institute of Integrative Biology University of Liverpool Biosciences Building Crown Street Liverpool L69 7ZB UK (1)
Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (1)
Cancer Research UK Manchester Institute Systems Oncology (1)
CEITEC-Central European Institute of Technology, Masaryk University, Brno CZ-62500, Czech Republic (1)
Faculty of Natural Sciences, Keele University. (1)
Institute for Anatomy and Cell Biology, Department of Molecular Embryology, Faculty of Medicine, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany (1)
Institute of Metabolic Science, University of Cambridge, UK (1)
Mechanisms of Diseases & Translational Research, School ofMedical Sciences, Department of Pathology, UNSW, Sydney, Australia (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, United Kingdom (1)

Keyword

Full-thickness laparo-endoscopic (1)
Laparoscopic resection (1)
Colorectal tumors (1)

IsPrivate

False (6)

Model Flag

Non Kinetic (2)

Submitter Keywords

Immuno-oncology (3)

Classification

protozoa (7)
bacteria (3)

Modification

15.994915 (1)
N6 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6-dimethyl-L-lysine (1)
57.021464 (1)

Study type

Transcription profiling by array (529)
ChIP-seq (373)
ChIP-chip by tiling array (198)
RNA-seq of coding RNA (185)
Other (45)
Unknown experiment type (33)
ChIP-chip by array (33)
RNA-seq of non coding RNA (26)
Methylation profiling by array (13)
Methylation profiling by high throughput sequencing (12)
Comparative genomic hybridization by array (8)
RIP-chip by array (5)
Cell line - High-throughput sequencing (5)
Transcription profiling by tiling array (5)
RNAi profiling by array (5)
High-throughput sequencing (4)
Animal - High-throughput sequencing (4)
Genotyping by array (4)
CLIP-seq (4)
MicroRNA profiling by array (4)
Spatial transcriptomics by high-throughput sequencing (3)
ATAC-seq (3)
DNA-seq (3)
Genotyping by high throughput sequencing (3)
Transcription profiling by SAGE (2)
Translation profiling (2)
Capture-C (2)
Transcription profiling by RT-PCR (2)
Bisulfite-seq (2)
CUT&RUN (2)

Release Date

2013 (377)
2010 (260)
2025 (258)
2022 (249)
2014 (241)
2015 (233)
2023 (229)
2012 (228)
2021 (220)
2011 (212)
2024 (204)
2020 (201)
2016 (196)
2018 (184)
2019 (183)
2017 (147)
2008 (112)
2009 (97)
2007 (45)
2026 (39)
2006 (31)
2005 (21)
2004 (12)
2003 (8)
2002 (2)
2000 (2)
2001 (1)
1995 (1)

Location

Russia (1)
Germany (1)

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Characterisation and localisation of plant metabolites involved in pharmacophagy in the turnip sawfly

Several herbivorous insects consume certain metabolites from plants for other purposes than nutrition, such as defence. Adults of the turnip sawfly, Athalia rosae take up specific terpenoids, called clerodanoids, from Ajuga reptans. These metabolites are slightly modified by the...

2023-10-30 | MTBLS7508 | MetaboLights

Protein localisation during chromatin regulator depletion

PRJNA967720 | ENA

Unveiling the role of RAB13 localisation in angiogenesis

PRJNA649779 | ENA

A method for independent estimation of false localisation rate for phosphoproteomics

Phosphoproteomics methods are commonly employed in labs to identify and quantify the sites of phosphorylation on proteins. In recent years, various software tools have been developed, incorporating scores or statistics related to whether a given phosphosite has been correctly identified, or to estim...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Homo sapiens (Human)

2022-06-09 | PXD028840 | Pride

False localisation Phosphorylation

A key role for chromosome compartment interactions in Xist RNA localisation

PRJEB101053 | ENA

Protein localisation during chromatin regulator depletion

Using ChECseq, we measured the effect of histone regulator depletion on chromatin protein localisation

ORGANISM(S): Saccharomyces cerevisiae

2023-06-29 | GSE231809 | GEO

Spatial localisation of human skin fibroblasts

PRJEB95110 | ENA

Rec8 ChIP-Seq experiment to analyse cohesin localisation in the Ctf19c mutants during meiotic prophase.

Ctf19c mutants were shown to specifically impair cohesin localisation at the pericentromere during mitosis. The goal of this experiment is to confirm whether this mutant has the same effect on cohesin localisation during meiotic prophase. To do so, diploid S. cerevisiae SK1 cells were constructed co...

ORGANISM(S): Saccharomyces cerevisiae

2015-12-15 | E-GEOD-70030 | biostudies-arrayexpress

Single-molecule localisation microscopy: accounting for chance co-localisation between foci in bacterial cells.

Not available

S-EPMC8448688 | biostudies-literature

RNA-Seq of vehicle- vs LPS-treated primary BMDMs from WT or interleukin-1alpha nuclear localisation sequence mutant mice

PRJEB108129 | ENA

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