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TranscriptomicsMla-specified Transcriptional Responses in Barley-Powdery Mildew Interactions
A large-scale parallel expression analysis was conducted to elucidate Mla-specified responses to powdery mildew infection using 22K Barley1 GeneChip probe arrays. Our goal was to identify genes differentially expressed in incompatible (resistant) vs. compatible (susceptible) and Mla-specified Rar1-...
ORGANISM(S): Hordeum vulgare 
2011-11-22 | E-GEOD-33396 | biostudies-arrayexpress
UnknownCurrent Practices in Hepatic Artery Infusion (HAI) Chemotherapy: An International Survey of the HAI Consortium Research Network.
Not available
S-EPMC11108096 | biostudies-literature
TranscriptomicsIdentification of long ncRNAs using RNA-seq in Arabidopsis
We profiled Arabidopsis transcriptom using RNA-seq. Each RNA library yielded 223-250 million 101-bp single-end reads (235M on average). Using Tophat and Cufflinks, 30,199~30,650 assembled transcripts were identified in each of 4 samples. Of them, 1340 ones were derived from intergenic regions includ...
ORGANISM(S): Arabidopsis thaliana 
2012-08-23 | E-GEOD-38612 | biostudies-arrayexpress
TranscriptomicsMolecular characterization of the incompatible and compatible interaction of soybean rust disease in Rpp3-containing PI462312 line
Experimental design: 1 genotype: PI- (resistant USDA Plant Introduction (PI462312) line containing SBR Rpp3 resistance gene) 3 treatments: Virulent soybean rust (Phakopsora pachyrhizi Tw80-2) challenge, avirulent soybean rust challenge (Hw94-1) & mock infection 3 replications 6 time points: 12, ...
ORGANISM(S): Glycine max 
2011-11-28 | E-GEOD-29740 | biostudies-arrayexpress
TranscriptomicsFHB on wheat
Near isogenic wheat lines, differing in the presence of the FHB-resistance QTL Fhb1 and Qfhs.ifa-5A, have been sequenced using Illumina HiSeq2000 under disease pressure (30 and 50 hai) as well as with mock-inoculation, to discern transcriptional differences induced by Fusarium graminearum.
ORGANISM(S): Triticum aestivum 
2013-10-10 | E-MTAB-1729 | biostudies-arrayexpress
ProteomicsProteome and phosphoproteome of hippocampus after focal cerebral ischemia 2 h in mice
We obtained the profiles of neuronal phosphoproteome after cerebral ischemia onset by isolating mice hippocampus. Hippocampus combined from either ten sham or ten focal cerebral ischemia 2 h mice were lysed, digested, labeled with different TMT tags, then pooled and analyzed by LC/LC-MS/MS. Five per...
ORGANISM(S): Mus musculus (Mouse) 
2022-03-14 | PXD027145 | Pride
Proteome   phosphoproteome  hippocampus  cerebral ischemia 
TranscriptomicsBarley cv Morex inoculated with Fusarium graminearum and water as mock control
Barley cv. Morex inoculated with Fusarium graminearum (isolate Butte 86) or water (mock). Sampled at 24, 48, 72, 96 and 144 hours after treatment. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Jayanand Boddu. The equivalent experiment ...
ORGANISM(S): Hordeum vulgare 
2011-11-22 | E-GEOD-33407 | biostudies-arrayexpress
ProteomicsPulmonary and Renal Long COVID at Two-year Revisit
To outline the temporal changes of long COVID, we profiled serum proteomes (dataset SP2) and urine proteomes (dataset UP2). The SP2 were measured for 37 patients during the disease (T1), the convalescence (T2), and at the 1-year revisit (T3); the UP2 were measured for 28 patients during the disease ...
ORGANISM(S): Homo Sapiens 
2024-06-04 | PXD027557 |
TranscriptomicsComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
The Clade A PP2C Highly ABA-Induced1 (HAI1, At5g59220) is strongly up-regulated by low water potential in an ABA-dependent manner. Using knockout mutants of hai1, we found that HAI1 functions as a negative regulator of low water potential-induced proline and osmoregulatory solute accumulation. We ...
ORGANISM(S): Arabidopsis thaliana 
2012-02-03 | E-GEOD-35258 | biostudies-arrayexpress
TranscriptomicsComparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
RESEARCH SUMMARY Bacterial blight and bacterial leaf streak, two of the most serious diseases of rice, are caused by Xanthomonas oryzae pathovar (pv.) oryzae (Xoo) and X. oryzae pv. oryzicola (Xoc) respectively. Xoo is a vascular pathogen that invades the xylem, whereas Xoc is non-vascular and c...
ORGANISM(S): Oryza sativa 
2009-06-24 | E-GEOD-16793 | biostudies-arrayexpress
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