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TranscriptomicsComparison of natural yeast hybrids
Analysis of genomic variation in several Saccharomyces cerevisiae x S. kudriavzevii natural hybrids S. cerevisiae and S. kudriavzevii yeasts have been described among wine strains. These strains exhibit enological properties of interest for the wine industry. A preliminary characterization of these ...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-12774 | biostudies-arrayexpress
TranscriptomicsGRO analysis of rap1-sil, tpk1 & tpk2.
GRO (Genomic run-on) experiments with different mutants that affect to the accumulation of non active RNA pol II along the yeast genome. Keywords: Genomic run-on GRO There are 4 different strains: rap1-sil (without the silencing domain), RAP1(both from Graham I.R. et al 1999) and tpk1 & tpk2 mutant...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-14080 | biostudies-arrayexpress
TranscriptomicsRNA pol II ChIP on chip (RPCC)
Adaptation of the ChIP-on-chip protocol, to calculate genomic transcription rates in S. cerevisiae. Keywords: ChIP-chip There are 3 different experimental conditions: -Yeast cell growing exponentially in YPD. -Yeast cell stopped after 2 h of changing them to YPGal. -Yeast cell growing exponentiall...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-14060 | biostudies-arrayexpress
TranscriptomicsChIP-chip of Spo14 and Mvp1
Genome-wide localization of two new RNA pol II interacting proteins. We use C-LYTAG to map binding sites of Spo14 and Mvp1 along the S. cerevisiae genome. Two biological replicates of each experiment were done. Keywords: ChIp-chip Two independent biological replicates of each IP. We used three macr...
ORGANISM(S): Saccharomyces cerevisiae 
2011-10-31 | E-GEOD-16905 | biostudies-arrayexpress
TranscriptomicsOsmotic stress on yeast S. cerevisiae
mRNA amount (RA) and Transcription rate (TR) analysis of W303-1a (wt) and hog1 mutant yeast strains growing in exponential phase in YPD subjected to osmotic stress This SuperSeries is composed of the following subset Series: GSE13096: Transcription rate analysis of wild type strain subjected to osm...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-13100 | biostudies-arrayexpress
TranscriptomicsGene category-specific regulation of transcription elongation across the yeast genome
Analysis of genome-wide differences of transcription using Genomic run-on (GRO), RNApol II ChIP-on-Chip, cDNA analysis and ChIP-on-Chip. This SuperSeries is composed of the following subset Series: GSE14060 RNA pol II ChIP on chip (RPCC) GSE14077 RPCC analysis of rap1-sil, tpk1 & tpk2 GSE14080 ...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-14084 | biostudies-arrayexpress
TranscriptomicsTranscription rate analysis of W303 hog1 mutant strain subjected to osmotic stress
Transcription rate (TR) analysis of W303 hog1 mutant yeast strain growing in exponential phase in YPD subjected to osmotic stress Keywords: Time course Transcription rate analysis by means of GRO of three independent replicates the yeast strain growing in exponential phase. Each time point replicat...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-13098 | biostudies-arrayexpress
TranscriptomicsRPCC analysis of rap1-sil, tpk1 & tpk2.
RPCC (RNA pol II ChIP-on-chip) experiments with different mutants that affect to the accumulation of non active RNA pol II along the yeast genome. Keywords: ChIP-chip There are 4 different strains: rap1-sil (without the silencing domain), RAP1 (both from Graham I.R. et al 1999) and tpk1 & tpk2 muta...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-14077 | biostudies-arrayexpress
TranscriptomicsmRNA amount analysis of W303 hog1 mutant strain subjected to osmotic stress
mRNA amount (RA) analysis of W303 hog1 mutant yeast strain growing in exponential phase in YPD subjected to osmotic stress Keywords: Time course Transcriptomic analysis of three independent replicates the yeast strain growing in exponential phase. Each time point replicate has been hybridized on a ...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-13099 | biostudies-arrayexpress
TranscriptomicsAnalysis of Spt16 depletion
Transcription rate analysis in Yeast by means of GRO, mRNA amount and ChIP-on-chip during the depletion of Spt16p. Keywords: Genomic run-on GRO ChIP-chip Transcription rate analysis by means of GRO and mRNA amount (RA) of three independent replicates during the depletion of Spt16p (Control and 5 &...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-14082 | biostudies-arrayexpress
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