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MetabolomicsWhat CHO is made of: Variations in the biomass composition of Chinese hamster ovary cell lines

Background: Cell line specific, genome-scale metabolic models enable rigorous and systematic in silico investigation of cellular metabolism. Such models have recently become available for Chinese hamster ovary (CHO) too. However, a key ingredient, namely an experimentally validat...

2020-07-13 | MTBLS1210 | MetaboLights
MetabolomicsA bovine plasma-derived serum substitute enables continuous manufacturing of cultivated fish biomass
Cultivated fish meat offers a sustainable solution to marine stock depletion, yet industrial scalability is limited by the prohibitive cost of fetal bovine serum (FBS). We developed a cost-effective bovine plasma-derived serum substitute (bPCPE-LTUS) through low-temperature ultrasonication. This phy...
2026-09-25 | MTBLS14288 | MetaboLights
MetabolomicsPhotosynthetic Carbon Partitioning and Metabolic Regulation in Response to Very-Low and High CO2 in Microchloropsis gaditana NIES 2587
Photosynthetic organisms fix inorganic carbon through carbon capture machinery (CCM) that regulates the assimilation and accumulation of carbon around ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). However, few constraints that govern the central carbon metabolism are regulated by the ca...
2022-01-14 | MTBLS1778 | MetaboLights
MetabolomicsDynamic utilization of low-molecular-weight organic substrates across a microbial growth rate gradient

AIM: Low-molecular-weight organic substances (LMWOSs) are at the nexus between micro-organisms, plant roots, detritus and the soil mineral matrix. The nominal oxidation state of carbon (NOSC) has been suggested as a potential parameter for modelling microbial uptake rates of LMWO...

2023-08-14 | MTBLS3558 | MetaboLights
MetabolomicsRhizosphere Microecological Changes Associated with Etiolation of Fritillaria thunbergii Miq.: Impacts on Biomass and Active Components

Dried bulbs of Fritillaria thunbergii Miq. (Liliaceae family) are medicinal materials used to clear heat and resolve phlegm. However, premature plant etiolation during cultivation reduces yield and hampers the industrial development of these plants. This study compared agronomic traits, soil prop...

2026-01-19 | MTBLS13717 | MetaboLights
GenomicsLow- and high-biomass samples
Low- and high-biomass samples Metagenome
PRJNA826861 | ENA
TranscriptomicsUncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle
The common edible mushroom Agaricus bisporus is a basidiomycete that thrives on decaying plant material in the forests and grasslands of North America and Europe. It is adapted to forest litter and contributes to global carbon recycling, degrading cellulose, hemicellulose and lignin in plant biomass...
ORGANISM(S): Agaricus bisporus 
2015-09-23 | E-GEOD-65800 | biostudies-arrayexpress
GenomicsRefinement of 16S rRNA gene analysis for low-biomass samples
Identification of limiting factors essential for phylogenetic analysis of low biomass microbiota samples.
PRJEB44787 | ENA
GenomicsRefinement of 16S rRNA gene analysis for low biomass biospecimens.
Identification of limiting factors essential for phylogenetic analysis of low biomass microbiota samples.
PRJEB44882 | ENA
GenomicsRefinement of 16S rRNA gene analysis for low biomass biospecimens.
Identification of limiting factors essential for phylogenetic analysis of low biomass microbiota samples.
PRJEB44893 | ENA
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