Lu Yang Y - OmicsDI

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Unknown (10288)
Proteomics (276)
Transcriptomics (64)
Metabolomics (46)
Genomics (38)

Organisms

Homo sapiens (116)
Mus musculus (39)
Gallus gallus (9)
Drosophila melanogaster (7)
Rattus norvegicus (6)
Severe acute respiratory syndrome coronavirus 2 (6)
Saccharomyces cerevisiae (3)
Arabidopsis thaliana (3)
Ovis aries (2)
Streptomyces avermitilis (2)
Zea mays (2)
Macaca mulatta (2)
Nannospalax galili (1)
Bos grunniens (1)
Brassica oleracea (1)
Deinococcus gobiensis (1)
Arachis hypogaea (1)
Oryza sativa Indica Group (1)
Staphylococcus aureus subsp. aureus RN4220 (1)
Pyricularia oryzae P131 (1)
Saccharum officinarum (1)
Mycobacteroides abscessus ATCC 19977 (1)
Streptococcus pneumoniae 23F (1)
Magnaporthe (1)
Candida albicans CAS15 (1)
502593 (1)
Lamprigera yunnana (1)
Phyllostachys edulis (1)
Fasciola hepatica (1)
Cnaphalocrocis medinalis (1)

Organisms

Mus musculus (2)
Homo sapiens (2)
Streptomyces avermitilis (1)

Repository

pride (141)
iProX (127)
biostudies-arrayexpress (71)
MetaboLights (46)
EGA (22)
MassIVE (7)
ENA (5)
geo (4)
jPOST (1)

Tissue

Cell culture (23)
Brain (13)
Epithelial cell (11)
Liver (10)
Testis (6)
Whole body (6)
Blood cell (6)
Plant cell (5)
Permanent cell line cell (5)
Fungal asexual spore (4)
Blood serum (4)
Lung (4)
Heart (3)
Cell suspension culture (3)
Root (3)
Leaf (3)
Hepatocyte (3)
Blood (3)
Blastopore (2)
Conidium (2)
Byssus (2)
Malignant cell (2)
Microglial cell (2)
HEK-293T cell (2)
Kidney cell (2)
Flower (2)
Melanocyte (2)
Skin (2)
Stem cell (2)
Spleen (2)

Disease

Disease free (9)
Cervix carcinoma (4)
Acute leukemia (4)
Age related macular degeneration (2)
Neuroblastoma (2)
Breast cancer (2)
Endometrial Endometrioid Adenocarcinoma (1)
Aortic dissection (1)
Ovarian cancer (1)
Primary ovarian insufficiency (1)
Hyperhomocysteinemia (1)
Lung small cell carcinoma (1)
Avian influenza (1)
Skin melanoma (1)
Hepatocellular carcinoma (1)
IgA glomerulonephritis (1)
Brain glioblastoma multiforme (1)
Huntington Disease (1)
Mixed disorder as reaction to stress (1)
Lung cancer (1)
Chronic myeloid leukemia (1)
Melanoma (1)
Cardiovascular system disease (1)
Pancreatic cancer (1)
Brain cancer (1)
Alzheimer's disease (1)
Renal cell carcinoma (1)
Liver cancer (1)

Technology Type

Mass Spectrometry (141)
Shotgun proteomics (54)
Mass spectrometry (42)
Data-dependent acquisition (24)
Bottom-up proteomics (24)
Affinity purification coupled with mass spectrometry proteomics (11)
Top-down proteomics (10)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
Data-independent acquisition (7)
Gel-based experiment (6)
Proteogenomics (4)
All-ion fragmentation (4)
NMR spectroscopy (3)
Illumina HiSeq 2000 (2)
Immunopeptidomics (2)
Affymetrix/Illumina (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
RNA mass spectrometry (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (20)
Liquid Chromatography MS - negative - reverse phase (19)
Liquid Chromatography MS - negative - hilic (6)
Liquid Chromatography MS - positive - hilic (5)
NextSeq 500 (3)
6540 Q-TOF LC/MS (Agilent) (3)
Illumina HiSeq 4000 (2)
Q Exactive (2)
Agilent 5975E GC/MSD (Agilent) (2)
Bruker (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion ETD (1)
SolariX (1)
Q Exactive HF (1)
Orbitrap Fusion Lumos (1)
Quattro micro API (Waters) (1)
GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
PEGASUS HT GC-MS (LECO) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Xevo G2 QTOF (Waters) (1)
Exactive (Thermo Scientific) (1)
API 4000 QTRAP (AB Sciex) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2025 (57)
2023 (37)
2026 (34)
2024 (34)
2022 (29)
2021 (26)
2012 (13)
2016 (12)
2013 (12)
2020 (12)
2017 (12)
2019 (11)
2015 (9)
2014 (9)
2010 (9)
2011 (8)
2018 (8)
2009 (3)
2008 (1)

CHEBI ID

CHEBI:15741 (19)
CHEBI:16704 (19)
CHEBI:15354 (18)
CHEBI:17368 (18)
CHEBI:30769 (18)
CHEBI:17750 (17)
CHEBI:28300 (15)
CHEBI:16750 (15)
CHEBI:6650 (15)
CHEBI:18012 (15)
CHEBI:16919 (15)
CHEBI:17895 (15)
CHEBI:16708 (14)
CHEBI:15428 (14)
CHEBI:16335 (14)
CHEBI:18211 (14)
CHEBI:15891 (14)
CHEBI:18183 (14)
CHEBI:30915 (14)
CHEBI:16709 (13)
CHEBI:17154 (13)
CHEBI:17568 (13)
CHEBI:7916 (13)
CHEBI:15971 (13)
CHEBI:16015 (13)
CHEBI:16027 (13)
CHEBI:27897 (13)
CHEBI:15756 (13)
CHEBI:17351 (13)
CHEBI:18132 (12)

Metabolite Name

Valine (10)
Uridine (10)
Creatine (10)
Hypoxanthine (10)
Leucine (9)
Glycine (9)
Pyroglutamic acid (9)
Choline (9)
Alanine (9)
Glutamine (9)
Uric acid (9)
Betaine (8)
Kynurenic acid (8)
Ornithine (8)
Cholic acid (8)
Serine (8)
Adenosine (8)
Threonine (8)
Guanosine (8)
AMP (7)
Uracil (7)
Methionine (7)
Xanthosine (7)
Lysine (7)
Proline (7)
Phenylalanine (7)
Isoleucine (7)
Adenine (7)
Creatinine (7)
Inosine (7)

First Public Date

2014 (3)
2022 (1)
2015 (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (19)
ChIP-seq (10)
RNA-seq of non coding RNA (5)
Transcription profiling by RT-PCR (3)
Comparative genomic hybridization by array (3)
Other (3)
ATAC-seq (2)
Animal - High-throughput sequencing (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (1680)
2022 (1399)
2024 (1340)
2023 (1329)
2021 (1105)
2020 (765)
2019 (529)
2018 (431)
2017 (360)
2016 (297)
2026 (257)
2015 (256)
2014 (187)
2013 (130)
2012 (101)
2011 (66)
2010 (43)
2008 (27)
2009 (26)
2007 (11)
2006 (11)
2005 (3)
2002 (2)
2001 (2)
2004 (1)
2000 (1)

Lab affiliation

Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (6)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)
Fudan University (4)
BGI Research (3)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College (3)
Department of Ophthalmology, LMU University Hospital, LMU Munich, Munich, Germany (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Sun Yat-sen University (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Cyrus Tang Medical Institute, Soochow University, Suzhou 215123, China. (2)
Zhejiang University (2)
University of the Pacific (2)
Shandong University (2)
Department of Nephrology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China;Guangdong-Hong Kong Joint Laboratory on Immunological and Genetic Kidney Diseases; Guangzhou, China. (1)
Department of Gynecological Oncology, Tongji Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
Nanjing First Hospital (1)
National Key Discipline Laboratory, Department of Nutrition and Food Hygiene, School of Public Health, Harbin Medical University, Harbin, P. R. China (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
lushuaiyao's lab, Chinese academic and medical colledge&peking union medical colledge, institute of medical biology (kunming, Yun nan Province) (1)
CAS Center for Excellence in Molecular Plant Science, Chinese Academic on Science (1)
El Bachir Affar, PhD, Professor Department of Medicine, University of Montreal Director of the Cell Signaling and Cancer Research Unit Research Center, Maisonneuve-Rosemont Hospital 5415 Assomption Blvd., Montreal, Quebec, H1T 2M4, CANADA Tel: 514 252-3400 (Ext: 3343) (1)
Shanghai Institute of Biochemistry and Cell Biology/Center for Excellence in Molecular Cell Science (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Animal Reproduction Institute, Guangxi University, Nanning, Guangxi, China (1)

Tags

xref:PubMed:20978075 (1)
xref:PubMed:22561152 (1)
xref:PubMed:19656197 (1)

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Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...

ORGANISM(S): Streptomyces avermitilis

2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress

Gene expression in epithelial and non-epithelial cells of renal origin

We aimed to define epithelial-specific genes in the kidney. In the developing mouse kidney at E12.5 epithelial cells are restricted to the ureteric bud, while mesenchymal cells surrounding the ureteric bud are non-epithelial. The mouse renal epithelial cell line mIMCD-3 was used to represent kidney ...

ORGANISM(S): Mus musculus

2010-09-23 | E-GEOD-24295 | biostudies-arrayexpress

Observation of unusual topological surface states in half-Heusler compounds LnPtBi (Ln=Lu, Y).

Not available

S-EPMC5052656 | biostudies-literature

Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

ORGANISM(S): Streptomyces avermitilis

2009-07-02 | GSE16892 | GEO

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 a...

ORGANISM(S): Mus musculus

2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress

Alterations in the gene expression profile in SKOV3 cells exposed to elaiophylin

Elaiophylin was screened and identified as a novel autophagy inhibitor, with significant antitumor efficacy as a single agent. To explore the mechanisms by which elaiophylin kills cancer cells, NimbleGen 12x135K microarrays were used to find the gene expression changes in SKOV3 cells treated with el...

ORGANISM(S): Homo sapiens

2022-06-07 | GSE205529 | GEO

Down-regulation of ATF1 leads to early neuroectoderm differentiation of human embryonic stem cells by increasing the expression level of SOX2.

Not available

S-EPMC6704446 | biostudies-literature

Covalency versus magnetic axiality in Nd molecular magnets: Nd-photoluminescence, strong ligand-field, and unprecedented nephelauxetic effect in fullerenes NdM₂N@C₈₀ (M = Sc, Lu, Y).

Not available

S-EPMC10848757 | biostudies-literature

Stable Unpaired Electron States in the Lu-Lu Bond Leading to the Absence of Odd-Even Parity in the Kondo Effect of Lu<sub>2</sub>@C<sub>82</sub> Transistors.

Not available

S-EPMC12005644 | biostudies-literature

Metabolic Signatures of Kidney Yang Deficiency Syndrome and Protective Effects of Two Herbal Extracts in Rats Using GC/TOF MS.