Lymphoblast - OmicsDI

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Transcriptomics (207)
Unknown (199)
Genomics (130)
Proteomics (40)
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Metabolomics (2)

Organisms

Homo sapiens (205)
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synthetic construct (1)
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cellular organisms (1)

Organisms

Homo sapiens (58)
Mus musculus (6)
Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (195)
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geo (47)
pride (34)
EGA (22)
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dbGaP (2)
MetaboLights (2)
ExpressionAtlas (1)

Tissue

Lymphoblast (13)
Cell culture (12)
B cell (6)
Blood (5)
Epithelial cell (5)
T cell (5)
Blood cell (4)
Bone marrow (3)
B-cell chronic lymphocytic leukemia cell (2)
Cell suspension culture (2)
Obsolete lymphoblast (2)
B-lymphoblast (1)
B-lymphoblast cell line (1)
Cell (1)
Embryonic stem cell (1)
Endothelial cell of umbilical vein (1)
Fibroblast (1)
JURKAT cell (1)
Leukocyte (1)
Liver (1)
Lymphoblastic leukemia cell line (1)
Lymphocyte (1)
Permanent cell line cell (1)
SUP-T1 cell (1)
T-lymphoblast (1)

Disease

Chronic lymphocytic leukemia (3)
Chronic myeloid leukemia (3)
Normal (2)
Colorectal cancer (2)
Freidriech's ataxia (1)
Acute Lymphoblastic Leukaemia (1)
Invasive Ductal Carcinoma (1)
Primary tumor (1)
Cancer cell line pool (1)
Cervical carcinoma (1)
Cervical cancer (1)
Acute leukemia (1)
Autism spectrum disorder (1)
Breast cancer (1)
Burkitt lymphoma (1)
Cancer (1)
Chronic myelogenous leukemia (1)
Leukemia (1)
Liver cancer (1)
Multiple myeloma (1)
Myeloid leukemia (1)
Neurodegenerative disease (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (22)
Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
Mass spectrometry (2)
NextSeq 500, Illumina HiScanSQ (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
Gel-based experiment (1)
Immunopeptidomics (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Orbitrap Fusion Lumos (2)
QuantStudio 12K Flex (1)
Axon- GenePix4000B (1)
418 [Affymetrix] (1)
GenePix 4000B [Axon Instruments] (1)
DNBSEQ-G400 (1)
Orbitrap Fusion ETD (1)
A LECO Pegasus 4D instrument with an Agilent 7683B autosampler, Agilent 7890A gas chromatograph and time-of-flight mass spectrometer (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2014 (35)
2013 (27)
2012 (25)
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2008 (23)
2015 (17)
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2006 (10)
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2009 (9)
2022 (8)
2016 (8)
2020 (7)
2025 (6)
2017 (6)
2007 (5)
2018 (4)
2005 (4)
2019 (3)
2026 (3)
2004 (1)

CHEBI ID

CHEBI:27354 (1)
CHEBI:35998 (1)
CHEBI:26911 (1)
CHEBI:16109 (1)
CHEBI:84288 (1)
CHEBI:88185 (1)
CHEBI:88182 (1)
CHEBI:37709 (1)
CHEBI:39248 (1)
CHEBI:78360 (1)
CHEBI:88180 (1)
CHEBI:88177 (1)
CHEBI:88174 (1)
CHEBI:84283 (1)
CHEBI:84282 (1)
CHEBI:88172 (1)
CHEBI:88063 (1)
CHEBI:88062 (1)
CHEBI:30813 (1)
CHEBI:18240 (1)
CHEBI:69441 (1)
CHEBI:84235 (1)
CHEBI:84230 (1)
CHEBI:45296 (1)
CHEBI:84268 (1)
CHEBI:43799 (1)
CHEBI:84272 (1)
CHEBI:84273 (1)
CHEBI:27605 (1)
CHEBI:84222 (1)

Metabolite Name

Beta-Alanine (2)
L-Allothreonine (2)
Glycine (2)
Ornithine (2)
L-Threonine (2)
L-Isoleucine (2)
L-Tyrosine (2)
Not avilable (1)
Robustaquinone D (1)
Salsoline-1-carboxylic acid (1)
Salsolinol 1-carboxylic acid (1)
N2'-Acetyl-3'-Hydroxykynurenamine (1)
N-Acetyl-L-Noradrenaline (1)
(R)-3,4-Dihydroxymandelonitrile (1)
1,2-Dihydroxynaphthalene-6-sulfonic acid (1)
N-Acetyl-3,4-Dihydroxy-L-phenylalanine (1)
N-Acetyl-6-Lactoyl-5,6,7,8-tetrahydropterin (1)
N-Acetyl-6-(1'-Hydroxy-2'-Oxopropyl)-Tetrahydropterin (1)
(3S,5S)-3,5-Diaminohexanoic acid (1)
(2R,5S)-2,5-Diaminohexanoic acid (1)
N8-Acetyl-spermidine (1)
N-Acetyl-Vanillylamine (1)
Prolyl-Gamma-glutamic acid (1)
(2R,4S)-2,4-Diaminopentanoic Acid (1)
1,6,7,8-Tetrahydroxy-2-Methylanthraquinone (1)
O-Hydroxylaminobenzoic Acid (1)
2-Hydroxy-2,4-Pentadienoic Acid (1)
Beta-Alanyl-L-Lysine (1)
Tabtoxin Biosynthesis Intermediate 5 (1)
4-Hydroxypiperidine (1)

First Public Date

2014 (25)
2021 (7)
2017 (7)
2024 (6)
2020 (6)
2025 (5)
2023 (5)
2016 (5)
2022 (3)
2018 (3)
2019 (2)
2015 (2)
2013 (2)
2011 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
+3amu) (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (133)
ChIP-seq (16)
RNA-seq of coding RNA (16)
Unknown experiment type (6)
ChIP-chip by array (6)
Other (3)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Human - Two-color microarray (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
MicroRNA profiling by array (1)

Release Date

2014 (38)
2013 (34)
2011 (33)
2010 (32)
2012 (31)
2008 (28)
2015 (23)
2016 (19)
2022 (17)
2019 (16)
2018 (16)
2023 (13)
2024 (12)
2009 (12)
2021 (12)
2025 (11)
2007 (10)
2017 (10)
2006 (9)
2020 (7)
2005 (4)
2026 (3)
2002 (2)
2003 (1)
1996 (1)

Lab affiliation

Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands. Division of Molecular Genetics, The Netherlands Cancer Institute, Amsterdam, The Netherlands. (2)
Pathology and Laboratory Medicine, Genomic Medicine, Neurological and Pediatrics Institutes, Cleveland Clinic (2)
1 National Centre for Scientific Research “Demokritos”, Agia Paraskevi, Attica, Greece 2 Department of Chemistry, National and Kapodistrian University of Athens, Greece (1)
Associate Professor, University College Dublin, School of Biomolecular and Biomedical Science, Conway Institute Belfield Dublin 4 (1)
Calico Life Sciences (1)
Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada (1)
Centre for Virus Research, University of Glasgow (1)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (1)
Chief Scientific Officer, Pelago Bioscience AB (1)
Clinical Research Division, Fred Hutchinson Cancer Research Center (1)
Committee on Cancer Biology, The University of Chicago, Chicago, IL, USA Department of Pathology, The University of Chicago, Chicago, IL, USA Department of Pediatrics, The University of Chicago, Chicago, IL, USA The University of Chicago Medicine Comprehensive Cancer Center, University of Chicago, Chicago, IL, USA (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Chemical & Systems Biology, Stanford University, USA (1)
Department of Chemistry and Biochemistry, Brigham Young University (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory (1)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (1)
Fred Hutchinson Cancer Research Center (1)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (1)
Institute of Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Avenue de la Terrasse, F-91198 Gif-sur-Yvette cedex, France (1)
Institute of Molecular Biology and Genetics Aarhus University Denmark (1)
Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria. (1)
Institute of Molecular Systems Medicine, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany Frankfurt Cancer Institute, Frankfurt am Main, Germany Cardio-Pulmonary Institute, Frankfurt am Main, Germany (lab head) (1)
Laboratory of Immunology, Division of Biotechnology Review and Research III, Office of Biotechnology Products,Center for Drugs Evaluation and Research, Food and Drug Administration, Silver Spring, Maryland, USA (1)
Leibniz – Institut für Analytische Wissenschaften - ISAS - e.V., Otto-Hahn-Str.6b 44227 Dortmund, Germany phone: +49 231 1392-4143 fax: +49 231 1392-4850 http://www.isas.de (1)
Molecular Proteomics Laboratory, Biological Medical Research Center, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany (1)
Professor Institute of Biochemistry II Goethe University Medical Faculty University Hospital Building 75 Theodor-Stern-Kai 7 60590 Frankfurt am Main Germany (1)
Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. (1)
Sainte-Justine Hospital Research Center (CRCHUSJ) (1)
Science for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden (1)

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Transcription profiling of human lymphoblast cell lines from 13 unrelated index patients and siblings

Recessive retinitis pigmentosa (RP) is often caused by nonsense mutations that lead to low mRNA levels as a result of nonsense-mediated decay. Some RP genes are expressed at detectable levels in leukocytes as well as in the retina. We designed a microarray-based method to find recessive RP genes bas...

ORGANISM(S): Homo sapiens

2008-10-21 | E-GEOD-12086 | biostudies-arrayexpress

Whole-genome mapping of ETV6-RUNX1 in pre-B lymphoblast models

PRJNA734856 | ENA

Homo sapiens

Human lymphoblast cell line methylome

PRJDB2378 | ENA

An Aggregated-Based Deep Learning Method for Leukemic B-lymphoblast Classification.

Not available

S-EPMC7763941 | biostudies-literature

Sustained remission with azacitidine monotherapy and an aberrant precursor B-lymphoblast population in juvenile myelomonocytic leukemia.

Not available

S-EPMC7328527 | biostudies-literature

Gene expression analysis of lymphoblast cells in patients with genetic defects in comparison with normal control samples: Profile and characterization of gene pathway expression

To underestand the possible effect of different genetic mutation in the transcriptome of the human lymphoblast cells.

ORGANISM(S): Homo sapiens

2014-01-02 | GSE53756 | GEO

Analysis of mtDNA in primary T lymphoblast derived exosomes

PRJNA472354 | ENA

Fetal calf serum heat inactivation and lipopolysaccharide contamination influence the human T lymphoblast proteome and phosphoproteome.

Not available

S-EPMC3280938 | biostudies-literature

RNA-seq of human lymphoblast samples to characterise RNA structural effects in Poikiloderma syndrome

We will sequence the RNA of lymphoblast samples, transformed with EBV, which have poikiloderma syndrome with mutations in c16orf57. The aim of the experiment is to characterise RNA structural effects in this disease.

ORGANISM(S): Homo sapiens

2013-01-22 | E-ERAD-60 | biostudies-arrayexpress

Gene expression profiling of Golabi-Ito-Hall derived lymphoblast cells compared to a matched healthy person

A point mutation in the WW domain of PQBP1 that mediates its interaction with SIPP1 causes the Golabi-Ito-Hall (GIH) syndrome, which is associated with severe mental retardation and physical deformations. In this project we compared lymphoblast cell lines from a healthy person and a patient with the...

ORGANISM(S): Homo sapiens

2011-01-01 | E-GEOD-19724 | biostudies-arrayexpress

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