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TranscriptomicsTranscription profiling of parthenocarpic tomato fruit
To evaluate the role of seeds in fruit quality, we induced parthenocarpy in tomato by regulating ovule-specific auxin synthesis or responsiveness using the INO promoter from A. thaliana, which is expressed in the outer layer of the integuments during early stages of ovule development. We compared th...
ORGANISM(S): Solanum lycopersicum 
2009-09-15 | E-GEOD-14358 | biostudies-arrayexpress
MetabolomicsTwo UGT84A Family Glycosyltransferases Regulate Phenol, Flavonoid, and Tannin Metabolism in Juglans regia (English Walnut)
We showed previously that gallic acid is produced in walnut from 3-dehydroshikimate by a shikimate dehydrogenase (JrSkDH). This study focuses on the next step in the hydrolysable tannin pathway, the formation of 1-O-galloyl-β-D-glucose from the phenolic gallic acid and UDP glucose by a glycos...
2022-10-11 | MTBLS2042 | MetaboLights
ProteomicsDeep learning neural network prediction method improves proteome profiling of vascular sap of grapevines during Pierces disease development
Plant secretome studies have shown the importance of plant defense proteins in the vascular system against pathogens. Studies on Pierces disease of grapevines caused by the xylem-limited bacteria Xylella fastidiosa Xf have detected proteins and pathways associated to its pathobiology. Despite the bi...
ORGANISM(S): Vitis Vinifera (ncbitaxon:29760) Xylella Fastidiosa Temecula1 (ncbitaxon:183190) 
2020-08-12 | MSV000085942 | MassIVE
TranscriptomicsComparison of transcriptomes in five varieties of citrus fruit
To identify genes associated with citrus peel development and manifestation of peel disorders, we analyzed flavedo, albedo and juice sac tissues from five types of citrus fruit including, mandarin orange, navel orange, valencia orange, grapefruit and lemon. Fruits of five different citrus cultivars....
ORGANISM(S): Citrus reticulata 
2014-01-01 | E-GEOD-50384 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis to elucidate puffing disorder in Citrus
To identify genes associated with citrus peel development and manifestation of peel disorders, we analyzed flavedo, albedo and juice sac tissues from navel orange displaying, and not displaying, the puff disorder. Symptomatic and healthy M-bM-^@M-^\NavelM-bM-^@M-^] orange fruits were harvested from ...
ORGANISM(S): Citrus sinensis 
2014-01-01 | E-GEOD-49957 | biostudies-arrayexpress
TranscriptomicsMicroarray Based Analysis of the Developing Sweet Orange Transcriptome
Using a custom microarray platform, we examined expression of 366 genes in leaf, two peel tissues, juice sac, and whole fruit during various developmental stages of Washington Navel orange fruit (Citrus sinensis L. Osbeck). 366 genes were chosen from Citrus EST libraries by in-silico analysis method...
ORGANISM(S): Citrus sinensis 
2010-05-26 | E-GEOD-10731 | biostudies-arrayexpress
ProteomicsComparative Proteomic Analysis of English Walnut (Juglans regia L.) Pellicle Tissues Reveal the Regulation of Nut Quality Attributes
Walnuts (Juglans regia L.) are a valuable dietary source of polyphenols and lipids, with increasing worldwide consumption. California is a major producer, with Chandler and Tulare among the cultivars more widely grown. Chandler produces kernels with extra light color at a higher frequency than , gai...
ORGANISM(S): Juglans Regia (ncbitaxon:51240) 
2020-11-20 | MSV000086493 | MassIVE
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