M. tuberculosis h37rv

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Unknown (643)
Transcriptomics (424)
Genomics (254)
Proteomics (166)
Metabolomics (28)
Models (3)
Other (3)
Multiomics (1)

Organisms

Mycobacterium tuberculosis (206)
Mycobacterium tuberculosis H37Rv (136)
Homo sapiens (112)
Mus musculus (112)
Homo sapiens (58)
Mus musculus (57)
Mycobacterium tuberculosis CDC1551 (12)
Thermus thermophilus HB8 (4)
Mycobacterium tuberculosis str. Erdman = ATCC 35801 (4)
Mycobacterium tuberculosis variant bovis (4)
Macaca fascicularis (3)
Mycobacterium tuberculosis variant bovis BCG (3)
Mycobacterium tuberculosis H37Ra (3)
Mycobacterium avium subsp. paratuberculosis (2)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (2)
Escherichia coli (2)
Bos taurus (2)
Mycolicibacterium smegmatis (2)
Cavia porcellus (1)
Oryctolagus cuniculus (1)
Enterococcus faecalis (1)
Acinetobacter baumannii (1)
Corynebacterium glutamicum ATCC 13032 (1)
Mycobacterium canetti (1)
Mycobacterium tuberculosis HN878 (1)
Mycobacterium marinum E11 (1)
Mycobacterium marinum M (1)
Mycobacterium (1)
Mycolicibacterium smegmatis MC2 155 (1)
Homo (1)

Organisms

Mycobacterium tuberculosis H37Rv (74)
Mycobacterium tuberculosis (69)
Mus musculus (11)
Homo sapiens (9)
Bos taurus (2)
Mycobacterium tuberculosis H37RvLP (1)
Mycobacterium tuberculosis H37RvMA (1)
Mycobacterium tuberculosis IAR2 (1)
Mycobacterium tuberculosis H37RvCO (1)
Mycobacterium tuberculosis EAI5 (1)
Mycobacterium tuberculosis H37RvJO (1)
Mycobacterium tuberculosis H37RvHA (1)
Mycobacterium tuberculosis EAI5/NITR206 (1)
Mycobacterium tuberculosis CAS/NITR204 (1)
Mycobacterium tuberculosis str. Beijing/NITR203 (1)
Mycobacterium tuberculosis str. Haarlem/NITR202 (1)
Mycobacterium tuberculosis H37Rv_2009 (1)
Mycobacterium tuberculosis H37Ra (1)
Mycobacterium tuberculosis subsp. tuberculosis (1)
Mycobacterium tuberculosis variant bovis BCG (1)
Escherichia coli K-12 (1)
Danio rerio (1)
mouse gut metagenome (1)

Repository

biostudies-arrayexpress (336)
ENA (233)
geo (124)
pride (112)
MetabolomicsWorkbench (15)
MetaboLights (13)
MassIVE (12)
PeptideAtlas (11)
PAXDB (7)
iProX (5)
jPOST (4)
PanoramaPublic (4)
BioModels (3)

Tissue

Cell culture (13)
Cultured cells (9)
Macrophage (8)
Bacterial cells (6)
Blood serum (4)
Prokaryotic cell (4)
Cell line cell (3)
Cell suspension culture (3)
Blood plasma (2)
Cell lysate (2)
Dendritic cell (2)
Primary cell (2)
Bronchoalveolar lavage (1)
Lung (1)
Monocyte (1)
Protein (1)
Response to bacterium (1)
Spleen (1)
T cell (1)
Whole body (1)

Disease

Tuberculosis (30)
Tuberculosis (16)
Pulmonary tuberculosis (12)
Non-diabetic (1)
Cystic fibrosis (1)
Extrapulmonary tuberculosis (1)
Lymph node tuberculosis (1)
Mixed disorder as reaction to stress (1)

Technology Type

Mass Spectrometry (127)
Shotgun proteomics (62)
Bottom-up proteomics (17)
ESI (15)
Data-dependent acquisition (15)
Mass spectrometry (9)
Data-independent acquisition (9)
Affinity purification coupled with mass spectrometry proteomics (8)
Top-down proteomics (6)
Mass spectrometry assay (4)
Gel-based experiment (4)
SWATH MS (4)
Affinity proteomics (2)
All-ion fragmentation (1)
Immunopeptidomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (10)
NextSeq 500 (10)
Illumina HiSeq 2000 (7)
Illumina NovaSeq X (6)
Illumina HiSeq 2500 (6)
Chemostat (3)
Bioanalyser (3)
Illumina MiSeq (3)
Nanodrop N1000 spectrophotometer (2)
Bellco roll-in incubator (2)
Variable Atmosphere Incubator (2)
NA (2)
NextSeq 550 (2)
Illumina DNA Prep sample preparation kits (Illumina Inc., San Diego, CA, USA). Final libraries concentrations and size were assessed with Quant-IT DNA Assay Kit and Agilent 4200 Tapestation System (Agilent Technologies, Milan, Italy), (1)
QIAamp DNA minikit, Qiagen, Germany (1)
Rstudio (1)
Microbeads (1)
GeneChip Instrument System (1)
Affymetrix mouse gene 1.0 ST arrays (1)
Qubit 2.0, Agilent 2100 (1)
Affymetrix 428 (1)
Axon 4000B scanner (1)
Anaerobic workstation with airlock (1)
Agilent 2100 Bioanalyzer (1)
ScanArray 5000 [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
NanoDrop (1)
Generation III Array Scanner [Amersham] (1)
None (1)
Illumina HiSeq 1500 (1)

Publication Date

2013 (61)
2010 (56)
2014 (55)
2018 (47)
2026 (37)
2012 (37)
2016 (36)
2022 (33)
2015 (29)
2021 (26)
2025 (25)
2008 (24)
2007 (23)
2019 (20)
2009 (20)
2020 (19)
2011 (19)
2024 (18)
2023 (17)
2017 (13)
2005 (5)
2006 (3)
2004 (2)

UNIPROT ID/AC

35KD_MYCTU (5)
A85A_MYCTU (5)
A85B_MYCTU (5)
A85C_MYCTU (5)
ACDP_MYCTU (5)
ACNA_MYCTU (5)
I6X8D2 (1)
P9WPB3 (1)
Q79FX8 (1)
P0CH91 (1)
Q79FX6 (1)
P9WPB1 (1)
P9WQD9 (1)
P9WQD7 (1)
P9WGR1 (1)
O53580 (1)
P9WNG3 (1)
I6Y778 (1)
P9WGR9 (1)
P9WGT3 (1)
P9WNG5 (1)
P9WNZ3 (1)
P9WNZ7 (1)
P9WPB5 (1)
P9WQD3 (1)
P9WQH7 (1)
O53578 (1)
P9WQH9 (1)
P96890 (1)
P95029 (1)

CHEBI ID

CHEBI:22036 (1)
CHEBI:12742 (1)
CHEBI:33442 (1)
CHEBI:45607 (1)
CHEBI:12757 (1)
CHEBI:12760 (1)
CHEBI:13394 (1)
CHEBI:10833 (1)
CHEBI:57540 (1)
CHEBI:13393 (1)
CHEBI:10786 (1)
CHEBI:527887 (1)
CHEBI:21901 (1)
CHEBI:44214 (1)
CHEBI:44215 (1)
CHEBI:7422 (1)
CHEBI:44281 (1)
CHEBI:29867 (1)
CHEBI:7423 (1)
CHEBI:44216 (1)
CHEBI:13396 (1)
CHEBI:57945 (1)
CHEBI:13395 (1)
CHEBI:21902 (1)
CHEBI:13419 (1)
CHEBI:13365 (1)
CHEBI:42857 (1)
CHEBI:44819 (1)
CHEBI:29356 (1)
CHEBI:44701 (1)

Metabolite Name

Thymine (2)
L-Proline (2)
Succinic acid (2)
Citrate (2)
Alpha-ketoglutarate (2)
Methylcitrate (1)
Mycothiol (1)
Ergothioneine(1+) (1)
So(d18:1) (1)
SM(d44:2) (1)
SM(d42:1) (1)
SM(42:0) (1)
PS(P-38:5) (1)
PMeOH(34:1) (1)
DMPE(32:0) (1)
CL(36:3)_(36:3) (1)
CL(34:2)_(34:2) (1)
CL(32:2)_(34:2) (1)
HexCer(d42:1) (1)
HexCer(d34:1) (1)
PC(P-42:2) (1)
PC(P-32:2) (1)
PC(P-30:0) (1)
PC(O-40:2) (1)
PC(O-40:1) (1)
PC(O-38:2) (1)
TG(O-56:3) (1)
TG(O-56:1) (1)
TG(O-54:3) (1)
TG(O-54:2) (1)

First Public Date

2014 (46)
2018 (29)
2013 (21)
2024 (18)
2022 (18)
2026 (16)
2025 (15)
2023 (14)
2019 (12)
2017 (12)
2015 (11)
2021 (10)
2016 (6)
2020 (5)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria (4)
Massachusetts Institute of Technology (3)
Colorado State University (2)
Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town (2)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Global Health Institute, EPFL, Lausanne, Switzerland (2)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College (2)
Rutgers Robert Wood Johnson Medical School Department of Biochemistry and Molecular Biology (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1Departments of Medicine & 2Pathology, Case Western Reserve University and University Hospitals Case Medical Center; 3Department of Molecular Biology & Microbiology Case Western Reserve University School of Medicine, Cleveland, Ohio 44106,USA. (1)
A.N. Bach Institute of Biochemistry, Federal Research Centre ‘Fundamentals of Biotechnology’ of the Russian Academy of Sciences, Leninsky pr., 33, 119071, Moscow, Russia (1)
Aix-Marseille Univ, CNRS, LISM, IMM FR3479, 13009 Marseille, France (1)
Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Assistant Professor Ramalingaswami Fellow Translational Health Science and Technology Institute NCR Biotech Science Cluster 3rd Milestone, Faridabad - Gurgaon Expressway PO box # 04 FARIDABAD 121001, India (1)
Associate Professor, Mycobacteria Research Laboratories Dept of Microbiology, Immunology,& Pathology (http://www.cvmbs.colostate.edu/DirectorySearch/Search/MemberProfile/CVMBS/3607) Associate Director, Research Integrity and Compliance Review Office (http://ricro.colostate.edu/) Colorado State University (1)
Boston Children's Hospital (1)
Boston Children's Hospital | Harvard Medical School (1)
CNRS-IPBS Immunomodulation By Mycobacterial Lipids and Glycoconjugates 205 route de Narbonne 31077 Toulouse cedex 4 (1)
CSIR-CCMB (1)
Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Instituto Nacional de Ciência e Tecnologia em Tuberculose (INCT-TB), Programa de Pós-Graduação em Biologia Celular e Molecular - Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Porto Alegre, Brazil (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
Chinese Center for Disease Control and Prevention (1)
DST-NRF Center for Excellence in Biomedical TB research south African Medical Research Council Center for Tuberculosis Research Division of Molecular Biology and Human Genetics Department of Biomedical Science Faculty of Medicine and Health Science Stellenbosch University Cape Town South Africa (1)
DST/NRF Centre of Excellence for Biomedical Tuberculosis Research/South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa (1)
Department of Chemistry, Scripps Research Institute (1)
Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa, 7925 (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (1)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (South Korea) (1)