M6 - OmicsDI

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Unknown (898)
Transcriptomics (749)
Genomics (239)
Proteomics (19)
Metabolomics (16)
Other (3)
Clinical (2)
Genomic (1)
Models (1)

Organisms

Homo sapiens (197)
Mus musculus (128)
Arabidopsis thaliana (62)
Drosophila melanogaster (49)
Schizosaccharomyces pombe (35)
Saccharomyces cerevisiae (28)
Staphylococcus aureus (27)
Rattus norvegicus (27)
Mycobacterium tuberculosis (25)
Apis mellifera (20)
Folsomia candida (15)
Campylobacter jejuni (13)
Neisseria meningitidis (9)
Streptococcus pneumoniae (9)
Neisseria gonorrhoeae (6)
Picea glauca (6)
Helicobacter pylori (6)
Plasmodium falciparum (5)
Escherichia coli (5)
Pseudomonas protegens (4)
Schistosoma mansoni (4)
Listeria monocytogenes (4)
Zea mays (4)
Candida albicans (4)
Danio rerio (4)
Salmonella enterica (3)
Yersinia enterocolitica (3)
Geobacter sulfurreducens (3)
Aedes aegypti (3)
Mycobacterium tuberculosis H37Rv (3)

Organisms

Homo sapiens (18)
Mus musculus (17)
hot springs metagenome (6)
soil metagenome (6)
Streptococcus pyogenes (5)
rhizosphere metagenome (5)
Solanum chacoense (4)
coal metagenome (4)
marine metagenome (4)
sediment metagenome (4)
Beta vulgaris subsp. vulgaris (3)
groundwater metagenome (3)
lake water metagenome (3)
Pseudomonas syringae pv. maculicola str. M6 (2)
Paracidovorax citrulli (2)
salt lake metagenome (2)
Spodoptera frugiperda (2)
Drosophila melanogaster (2)
Glycine max (2)
Capra hircus (2)
unidentified (2)
Calescamantes bacterium SCGC AAA471-M6 (1)
Streptococcus pyogenes MGAS10394 (1)
Burkholderia sp. M6-3 (1)
Pseudoalteromonas sp. BDTF-M6 (1)
Transmissible gastroenteritis virus (1)
Loktanella gaetbuli (1)
Olleya sediminilitoris (1)
Sandaracinobacteroides saxicola (1)
Asticcacaulis excentricus (1)

Repository

biostudies-arrayexpress (775)
ENA (174)
geo (28)
EGA (22)
pride (12)
MetaboLights (9)
MetabolomicsWorkbench (7)
MassIVE (3)
iProX (2)
PAXDB (2)
dbGaP (1)
FAIRDOMHub (1)

Tissue

Cultured cells (3)
Cell culture (3)
Plant cell (2)
Pancreas (1)
Uterus (1)
Yeast cells (1)
Macrophages (1)
HEK-293F cell (1)
Protonema (1)
Gingival fluid (1)
Seedling (1)
Cerebrospinal fluid (1)
Macrophage (1)
Brain (1)
T cell (1)
Blood (1)

Disease

Normal (7)
Erythroleukemia (2)
Unspecified peripheral T-cell lymphoma (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
Uninfected (1)
Dengue 2 (JAM1409) infected (1)
Low-stage neuroblastoma (1)
Myasthenia gravis (seropositive patient with low thymic hyperplasia) (1)
Colon cancer Dukes C (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Invasive Ductal Carcinoma (1)
Colorectal cancer recurrence-free (1)
Uncomplicated gonorrhoea (1)
Teratozoospermia and infertility (1)
Marsh 3 (1)
Non-diseased (1)
Dukes D primary colon cancer (1)
Control (1)
Colon cancer metastasis (1)
Rheumatoid arthritis (1)
None- acute control (1)
Leukemia (1)
Temporal lobe epilepsy (1)
These mice have a relatively normal first wave of spermatogenesis but never become fertile. Older animals show increased apoptosis of germ cells, increasing in severity as germ cell stage advances. (1)
Neurological disease (1)
Benign adenoma (1)
Melanoma (1)
None- Acute Control (1)
Hypertensive (1)
5 days post MHV infection (1)

Technology Type

Mass Spectrometry (19)
Mass spectrometry (8)
ESI (5)
Shotgun proteomics (5)
Data-dependent acquisition (3)
Bottom-up proteomics (3)
Illumina HiSeq 2000 (2)
Data-independent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina Infinium HumanCoreExome Beadchip (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
API (1)
EI (1)
DiaPASEF (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (32)
Axon GenePix 4000A scanning hardware (16)
Variable Atmosphere Incubator (9)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 4000 (8)
G2565AA DNA microarray scanner [Agilent] (7)
Spectronic Helios Alpha UV-Vis spectrophotometer (7)
Bioanalyser (7)
Illumina HiSeq 2000 (7)
NanoDrop (6)
Axon- GenePix4000B (6)
Scanning hardware (6)
Vortex (5)
Ultracentrifuge (4)
GenePix 4000A [Axon Instruments] (4)
G2565BA DNA microarray scanner [Agilent] (4)
Illumina HiSeq 2500 (4)
428 [Affymetrix] (3)
GenePix Professional 4200A [Axon Instruments] (3)
GeneQuant (3)
Chemostat (3)
ScanArray Express HT [PerkinElmer] (3)
GenePix 4000B [Axon Instruments] (3)
Ultrospec 3000 (2)
Anaerobic workstation with airlock (2)
Nanodrop N1000 spectrophotometer (2)
AB SOLiD 4 System (2)
BD GasPak 150 Jar (2)
Jencons Millennium CO2 Incubator (2)
Bellco roll-in incubator (2)

Publication Date

2010 (94)
2007 (85)
2005 (74)
2009 (73)
2011 (72)
2008 (66)
2012 (63)
2006 (49)
2013 (40)
2016 (34)
2015 (33)
2014 (31)
2004 (25)
2024 (17)
2023 (16)
2022 (12)
2025 (10)
2019 (9)
2026 (7)
2020 (6)
2018 (6)
2003 (5)
2021 (4)
2017 (1)

UNIPROT ID/AC

89462.XP_006080923.1 (2)
89462.XP_006063950.1 (2)
89462.XP_006054213.1 (2)
89462.XP_006047782.1 (2)
89462.XP_006064386.1 (2)
89462.XP_006064716.1 (2)
89462.XP_006046781.1 (2)
89462.XP_006052615.1 (2)
89462.XP_006057898.1 (2)
89462.XP_006041720.1 (2)
89462.XP_006043256.1 (2)
89462.XP_006058686.1 (2)
89462.XP_006054502.1 (2)
89462.XP_006078343.1 (2)
89462.XP_006043002.1 (2)
89462.XP_006047818.1 (2)
89462.XP_006066318.1 (2)
89462.XP_006055170.1 (2)
89462.XP_006056283.1 (2)
89462.XP_006043264.1 (2)
89462.XP_006062820.1 (2)
89462.XP_006041551.1 (2)
89462.XP_006051480.1 (2)
89462.XP_006055851.1 (2)
89462.XP_006043687.1 (2)
89462.XP_006050936.1 (2)
89462.XP_006053589.1 (2)
89462.XP_006059042.1 (2)
89462.XP_006065006.1 (2)
89462.XP_006062024.1 (2)

CHEBI ID

CHEBI:42504 (2)
CHEBI:16831 (2)
CHEBI:15741 (2)
CHEBI:17780 (2)
CHEBI:16196 (2)
CHEBI:16946 (2)
CHEBI:15843 (2)
CHEBI:132244 (2)
CHEBI:18012 (2)
CHEBI:27897 (2)
CHEBI:17884 (2)
CHEBI:28716 (2)
CHEBI:70976 (2)
CHEBI:17351 (2)
CHEBI:17687 (2)
CHEBI:30769 (2)
CHEBI:190293 (1)
CHEBI:63709 (1)
CHEBI:190292 (1)
CHEBI:49274 (1)
CHEBI:193189 (1)
CHEBI:85442 (1)
CHEBI:64959 (1)
CHEBI:144355 (1)
CHEBI:167418 (1)
CHEBI:194267 (1)
CHEBI:191093 (1)
CHEBI:211931 (1)
CHEBI:194288 (1)
CHEBI:4874 (1)

Metabolite Name

Valine (2)
Threonine (2)
4-Allyl-1,2-diacetoxybenzene (1)
Chavibetol acetate (1)
Chavibetol (1)
Chavicol acetate (1)
Methyl chavicol (1)
Terpinen-4-ol (1)
Nisinic acid (1)
Clupanodonic Acid (1)
Cis-5,8,11-Eicosatrienoic Acid (1)
Cis-11,14-Eicosadienoic Acid (1)
(S)-Bromoenol lactone (1)
NNH (1)
15(R)-15-Methyl prostaglandin A2 (1)
10-methoxy-4H-benzo[4,5]cyclohepta[b]thiophen-4-one (1)
Thiamine phosphate (1)
3-phenyl-5-[3-(trifluoromethyl)-1H-pyrazol-1-yl]-1,2,4-thiadiazole (1)
Dihomo-¦Ã-linolenic acid methyl ester (1)
2-({2-[(5-methylisoxazol-3-yl)amino]-2-oxoethyl}thio)acetic acid (1)
Alpha-Methylhistamine (1)
4-hydroxy-6,7-diphenyl-5,6-dihydro-2H-pyrano[3,2-c]pyridine-2,5-dione (1)
¦´-Glutamylcysteine (1)
L-3-hydroxykynurenine (1)
Trans-3-indoleacrylic acid (1)
Indole-3-carboxaldehyde (1)
Eicosatetraynoic acid (1)
Hydroxybutyrate (1)
Diethyl 2-{[2-(2-thienylcarbonyl)hydrazino]methylidene}malonate (1)
3-(allylsulfanyl)-4-[4-(benzyloxy)phenyl]-5-methyl-4H-1,2,4-triazole (1)

First Public Date

2024 (25)
2025 (23)
2020 (19)
2018 (18)
2026 (14)
2023 (12)
2019 (12)
2014 (12)
2013 (10)
2022 (9)
2017 (6)
2015 (6)
2021 (5)
2016 (3)

Classification

bacteria (9)
viruses (1)
protozoa (1)

Modification

79.966331 (1)
-18.010565 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
57.021464 (1)

Study status

Completed (2)

Study type

Transcription profiling by array (575)
RNA-seq of coding RNA (38)
ChIP-seq (32)
Comparative genomic hybridization by array (30)
ChIP-chip by array (25)
Unknown experiment type (22)
Methylation profiling by high throughput sequencing (7)
ChIP-chip by tiling array (5)
Other (5)
Transcription profiling by tiling array (4)
RNA-seq of coding RNA from single cells (4)
Methylation profiling by array (3)
Transcription profiling by RT-PCR (2)
RNA-seq of non coding RNA (2)
Interventional (2)
Transcription profiling by SAGE (1)
MNase-seq (1)
Translation profiling (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
4C (1)
ATAC-seq (1)
Hi-C (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
CUT&RUN (1)

Release Date

2022 (133)
2023 (129)
2021 (107)
2025 (103)
2010 (102)
2007 (92)
2024 (86)
2009 (80)
2011 (79)
2020 (79)
2005 (73)
2012 (70)
2008 (69)
2016 (65)
2019 (62)
2013 (59)
2015 (55)
2006 (54)
2014 (48)
2018 (46)
2017 (28)
2004 (28)
2026 (13)
2003 (8)
2002 (2)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Centre of New Technologies, University of Warsaw, 02-089 Warsaw, Poland (1)
Department of Pharmacology & Therapeutics, McGill University, 3655 Prom. Sir-William-Osler, Montreal, Quebec, H3G 1Y6, Canada. McGill Centre for Microbiome Research, Montreal, Quebec, Canada (1)
Laboratory of Biosignaling & Therapeutics, KU Leuven Department of Cellular and Molecular Medicine, University of Leuven, B-3000 Leuven, Belgium. (1)
Medizinische Universität Wien Center for Pathophysiology, Infectiology and Immunology Lazarettgasse 19 1090 Vienna, Austria (1)
Department of Cell and Chemical Biology, Leiden University Medical Center (LUMC), Einthovenweg 20, 2333, ZC, Leiden, The Netherlands. (1)
Microbial Natural Products, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS). Helmholtz Centre for Infection Research (HZI). Department of Pharmacy at Saarland University, Campus Building E8.1, 66123 Saarbrücken, Germany. (1)
Center for Interdisciplinary Cardiovascular Sciences, Division of Cardiovascular Medicine, Department of Medicine, Brigham Women's Hospital, Harvard Medical School, Boston, MA, United States (1)
IBCH RAS (1)
Boston University (1)
Department of Computational and RNA Biology, Copenhagen University, Denmark (1)
Basilbiotech, Incheon 22002, Republic of Korea. (1)
Rheumatology, Department of Clinical Science in Lund Medical Faculty, Lund University, Sweden (1)

Location

United States (2)

Keyword

Cyclosporine (2)
Busulfan (2)
Cyclosporins (2)
Cyclophosphamide (2)
Methotrexate (1)
Fludarabine (1)
Fludarabine phosphate (1)
Methylprednisolone (1)
Methylprednisolone Acetate (1)
Methylprednisolone Hemisuccinate (1)
Prednisolone (1)
Prednisolone acetate (1)
Prednisolone hemisuccinate (1)
Prednisolone phosphate (1)

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Gut Commensal Bacteria-Derived Methionine is Required for Host Reproduction by Modulating RNA m6A Methylation of the Insulin Receptor_targeted metabolites

Gut commensal bacteria promote host reproduction by modulating metabolism and nutrition, but the molecular mechanisms by which microbes regulate reproduction remain unclear. Here, we show that gut commensal bacteria promote host reproduction by providing amino-acid methionine, which controls the ...

2025-06-22 | MTBLS12470 | MetaboLights

Systemic Inflammation Induces Cholestasis via Upregulating a Short Variant of FTO to Remove the m6A Methylation in the 3’-UTR of Cyp7b1 mRNAs in liver

The cholestasis frequently occurs in patients with inflammatory processes. However, the mechanisms of inflammation in inducing cholestasis are still unclear. Here, by using lipopolysaccharide (LPS)-induced cholestasis mouse models, we found that most genes encoding enzymes responsible for bile acid ...

2025-11-07 | MTBLS10713 | MetaboLights

Lacinutrix sp. JR-M6

Lacinutrix sp. JR-M6 Genome sequencing

PRJNA251504 | ENA

Pyxidicoccus sp. M6 strain:M6

Pyxidicoccus sp. M6 strain:M6 Genome sequencing

PRJNA1347818 | ENA

Arthrobacter sp. M6 strain:M6

Arthrobacter sp. M6 strain:M6 Genome sequencing and assembly

PRJNA315170 | ENA

Roseovarius sp. E0-M6

Roseovarius sp. E0-M6 whole genome shotgun sequencing project