Ma Jeffrey J - OmicsDI

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Unknown (202)
Genomics (68)
Transcriptomics (16)
Proteomics (13)
Metabolomics (7)
Genomic (4)

Organisms

Homo sapiens (78)
Andropogon gerardi (9)
Bacteria (9)
Borrelia (9)
Botrytis cinerea (9)
Candida albicans (9)
Canis lupus familiaris (9)
Clostridium perfringens (9)
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EGA (66)
biostudies-arrayexpress (18)
pride (9)
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Tissue

Blood (2)
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Disease

Amyotrophic lateral sclerosis type 1 (2)
Diabetes mellitus (1)
Macular holes (1)
Proliferative diabetic retinopathy (1)

Technology Type

Mass Spectrometry (9)
Illumina 15K (8)
Mass spectrometry (6)
Shotgun proteomics (3)
Top-down proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Affymetrix 6.0 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Gel-based experiment (1)
Olink affinity proteomics (1)

Instrument Platform

Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (1)
Thermo Fisher Scientific (MA, USA) Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 µm particle size (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
A LECO Pegasus 4D instrument with an Agilent 7683B autosampler, Agilent 7890A gas chromatograph and time-of-flight mass spectrometer (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Q Exactive (1)
MS Imaging - (1)
Xevo QTof MS (Waters) (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2015 (5)
2011 (5)
2012 (3)
2007 (3)
2023 (3)
2022 (3)
2013 (2)
2010 (2)
2024 (2)
2014 (2)
2019 (2)
2025 (2)
2021 (1)
2026 (1)
2020 (1)

CHEBI ID

CHEBI:16668 (3)
CHEBI:16027 (3)
CHEBI:17822 (2)
CHEBI:15356 (2)
CHEBI:17126 (2)
CHEBI:27570 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:24898 (2)
CHEBI:17113 (2)
CHEBI:14336 (2)
CHEBI:28044 (2)
CHEBI:30746 (2)
CHEBI:116314 (2)
CHEBI:21557 (2)
CHEBI:29016 (2)
CHEBI:15891 (2)
CHEBI:340824 (2)
CHEBI:18257 (2)
CHEBI:6650 (2)
CHEBI:18237 (2)
CHEBI:16856 (2)
CHEBI:73024 (2)
CHEBI:16010 (2)
CHEBI:16695 (2)
CHEBI:26984 (2)
CHEBI:15741 (2)
CHEBI:17553 (2)
CHEBI:17268 (2)
CHEBI:17858 (2)

Metabolite Name

Hypotaurine (2)
Theronine (1)
Adenosylhomocysteine (1)
Hesperetin sulfate (1)
Naringenin sulfate (1)
N-methylserotonin (1)
Acetyl-methionine (1)
Hexadecenoylcarnitine (1)
Glutathione (reduced) (1)
IsoLeucine (1)
D18:1/ωh36:2-Cer(OS) (1)
D17:1/ωh36:1-Cer(OS) (1)
D18:1/ωh34:2-Cer(OS) (1)
D17:1/ωh34:2-Cer(OS) (1)
D18:1/ωh32:2-Cer(OS) (1)
D17:1/ωh32:0-Cer(OS) (1)
D17:1/ωh32:1-Cer(OS) (1)
D18:1/ωh30:0-Cer(OS) (1)
D18:1/ωh30:1-Cer(OS) (1)
D17:1/ωh30:0-Cer(OS) (1)
D18:1/ωh28:0-Cer(OS) (1)
Ωh33:1-OHFA (1)
Ωh32:1-OHFA (1)
Ωh32:2-OHFA (1)
Ωh17:0-OHFA (standard) (1)
D18:1/ϖh36:1-18:2-GlcCer(EOS) (1)
D18:1/ϖh35:1-18:2-GlcCer(EOS) | d17:1/ϖh36:1-18:2-GlcCer(EOS) (1)
D18:1/ϖh34:1-18:2-GlcCer(EOS) (1)
D18:1/ϖh34:2-18:2-GlcCer(EOS) (1)
D17:1/ϖh34:1-18:2-GlcCer(EOS) | d18:1/ϖh33:1-18:2-GlcCer(EOS) (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (13)
ChIP-seq (2)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA (1)

Release Date

2021 (29)
2023 (27)
2022 (25)
2025 (24)
2018 (18)
2020 (14)
2024 (13)
2015 (11)
2014 (11)
2012 (8)
2017 (8)
2013 (7)
2011 (6)
2016 (6)
2019 (5)
2010 (3)
2007 (3)
2026 (2)

Lab affiliation

Northeastern University (2)
Department of Ophthalmology, Penn State College of Medicine (1)
MiNA Therapeutics, United Kingdom (1)
Microbiology department at the Icahn School of Medicine atMount Sinai (1)
NINDS Clinical Proteomics Unit National Institutes of Health (1)
Penn State Eye Center, Penn State College of Medicine, Hershey Pennsylvania, USA (1)
Professor of Biochemistry, Duke University School of Medicine (1)
University of California San Francisco (1)

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Differences In Use Of Services And Quality Of Care In Medicare Advantage And Traditional Medicare, 2010 And 2017.

Not available

S-EPMC10171780 | biostudies-literature

Fatty acid transport protein 4 is required for incorporation of saturated ultralong-chain fatty acids into epidermal ceramides and monoacylglycerols

Fatty acid transport protein 4 (FATP4) is an acyl-CoA synthetase that is required for normal permeability barrier in mammalian skin. FATP4 (SLC27A4) mutations cause ichthyosis prematurity syndrome, a nonlethal disorder. In contrast, Fatp4^-/- mice die neonatally from a defective barrier. H...

2021-07-15 | MTBLS1138 | MetaboLights

Comprehensive National Inpatient Sample data reveals low but rising Pneumocystis jiroveci pneumonia risk in inflammatory bowel disease patients.

Not available

S-EPMC9062846 | biostudies-literature

Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans

Plant fibers in byproduct streams produced by non-harsh food processing methods represent biorepositories of diverse, naturally occurring, and physiologically active biomolecules. To demonstrate one approach for their characterization, mass spectrometry of intestinal contents from gnotobiotic mice, ...

2022-07-28 | MTBLS2331 | MetaboLights

Identification of regulators of polyploidization presents therapeutic targetsfor treatment of AMKL

Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Go...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2014-01-27 | MSV000078536 | MassIVE

Efficacy and safety of regorafenib in patients with metastatic and/or unresectable GI stromal tumor after failure of imatinib and sunitinib: a multicenter phase II trial.

Not available

S-EPMC3675695 | biostudies-literature

Primary Care Physicians In Medicare Advantage Were Less Costly, Provided Similar Quality Versus Regional Average.

Not available

S-EPMC11040031 | biostudies-literature

Consensus Middle East and North Africa Registry on Inborn Errors of Immunity.

Not available

S-EPMC8310844 | biostudies-literature

Randomized phase II trial of erlotinib alone or with carboplatin and paclitaxel in patients who were never or light former smokers with advanced lung adenocarcinoma: CALGB 30406 trial.