Ma Juan J - OmicsDI

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Unknown (828)
Proteomics (53)
Genomics (35)
Transcriptomics (22)
Metabolomics (9)
Models (1)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (70)
Mus musculus (11)
Escherichia coli (5)
Schizosaccharomyces pombe (4)
Saccharomyces cerevisiae (2)
Sus scrofa (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Chlorocebus aethiops (1)
Streptomyces coelicolor (1)
Rattus norvegicus (1)
Chlorocebus sabaeus (1)
Oryctolagus cuniculus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Bacteria (1)
Bos taurus (1)
Canis lupus familiaris (1)
Drosophila melanogaster (1)
Equidae (1)
Komagataeibacter europaeus (1)
Proboscidea (1)
Vitis vinifera (1)
Xenopus laevis (1)

Repository

EGA (34)
pride (31)
biostudies-arrayexpress (23)
iProX (18)
MetaboLights (8)
MassIVE (4)
BioModels (1)
dbGaP (1)
GNPS (1)

Tissue

Cell culture (5)
Epithelial cell (4)
Breast cancer cell line (2)
Kidney cell line (2)
Blood cancer cell (1)
Blood plasma (1)
Bone cancer cell line (1)
Bone marrow (1)
Brain (1)
Brain cancer cell line (1)
Breast (1)
Breast cancer cell (1)
Cecum cancer cell line (1)
Cerebrospinal fluid (1)
Cervical cancer cell line (1)
Colonic cancer cell (1)
Colorectal cancer cell line (1)
Culture fluid (1)
Fibroblast of mammary gland (1)
Kidney cancer cell (1)
Liver cancer cell (1)
Lymph node (1)
MIN6-N8 cell (1)
Macrophage (1)
Neuroblastoma cell (1)
Neuroblastoma cell line (1)
Ovary cancer cell (1)
Ovary cancer cell line (1)
Pancreatic islet (1)
Permanent cell line cell (1)

Disease

Breast cancer (3)
Type 1 diabetes mellitus (3)
Disease free (2)
Neuroblastoma (2)
Cirrhosis (1)
Alzheimer's disease (1)
Colon cancer (1)
Down syndrome (1)
Inflammation (1)
Lung cancer (1)
Malignant neoplasm of ovary (1)
Prostate adenocarcinoma (1)
Visceral leishmaniasis (1)
Zika fever (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (12)
Mass spectrometry (7)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (5)
Data-dependent acquisition (3)
Data-independent acquisition (3)
SRM/MRM (2)
Affymetrix 6.0 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina MiSeq (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina NovaSeq 6000 (1)
Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (1)
Thermo Fisher Scientific (MA, USA) Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 µm particle size (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
SolariX (1)
Capillary electrophoresis MS - positive (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) (1)
LTQ-Orbitrap (1)

Publication Date

2022 (13)
2021 (10)
2024 (8)
2025 (8)
2013 (7)
2020 (5)
2019 (5)
2012 (4)
2010 (4)
2026 (4)
2018 (3)
2023 (3)
2017 (3)
2016 (3)
2014 (2)
2008 (1)
2007 (1)
2011 (1)

CHEBI ID

CHEBI:15603 (4)
CHEBI:15428 (3)
CHEBI:17191 (3)
CHEBI:17295 (3)
CHEBI:17750 (3)
CHEBI:27897 (3)
CHEBI:15741 (2)
CHEBI:15760 (2)
CHEBI:16015 (2)
CHEBI:16347 (2)
CHEBI:16414 (2)
CHEBI:16977 (2)
CHEBI:17053 (2)
CHEBI:17115 (2)
CHEBI:17203 (2)
CHEBI:17895 (2)
CHEBI:17924 (2)
CHEBI:18050 (2)
CHEBI:28044 (2)
CHEBI:28790 (2)
CHEBI:10072 (1)
CHEBI:111510 (1)
CHEBI:131420 (1)
CHEBI:132176 (1)
CHEBI:132177 (1)
CHEBI:132184 (1)
CHEBI:132185 (1)
CHEBI:132187 (1)
CHEBI:132192 (1)
CHEBI:132194 (1)

Metabolite Name

Glycine (3)
L-Leucine (3)
D-Sorbitol (2)
Glycerophosphocholine (2)
L-Alanine (2)
L-Glutamic acid (2)
L-Glutamine (2)
L-Isoleucine (2)
L-Phenylalanine (2)
L-Proline (2)
L-Serine (2)
L-Tyrosine (2)
L-Valine (2)
Pyroglutamic acid (2)
Succinic acid (2)
Tryptophan (2)
(+)-catechin (1)
(+)-gallocatechin (1)
(+)-trans-epsilon-viniferin (1)
(-)-epicatechin (1)
(-)-epicatechin-3-O-gallate (1)
(-)-epigallocatechin (1)
(-)-epigallocatechin 3-gallate (1)
(2R,3R)-trans-fertaric acid (1)
(2R,3S)-trans-coutaric acid (1)
(2S,3R)-trans-caftaric acid (1)
1-Butanone, 2-chloro-3-methyl-1-[4-(1-methylethyl)phenyl]- (1)
1-Cyclohexene-1-carboxylic acid, 3,4,5-tris[(trimethylsilyl)oxy]-, trimethylsilyl ester, [3R-(3alpha,4alpha,5beta)]- (1)
1-[(5-Amino-5-carboxypentyl)amino]-1-deoxyfructose (1)
1H-Indole, 1-(trimethylsilyl)-3-[2-[(trimethylsilyl)oxy]ethyl]- (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Modelling Approach

Constraint-based model (1)

Modification

0.0 (1)
0.984016 (1)
144.102062 (1)
15.994915 (1)

Study type

Transcription profiling by array (14)
RNA-seq of coding RNA (3)
Unknown experiment type (2)
ChIP-chip by array (1)
Genotyping by array (1)
ChIP-seq (1)
Methylation profiling by array (1)

Release Date

2022 (110)
2023 (100)
2021 (100)
2025 (89)
2024 (83)
2020 (69)
2019 (57)
2017 (41)
2018 (40)
2013 (28)
2014 (26)
2015 (26)
2016 (22)
2011 (17)
2012 (15)
2026 (11)
2010 (9)
2009 (6)
2008 (1)
2007 (1)

Lab affiliation

Pacific Northwest National Laboratory (2)
Universitat Internacional de Catalunya, Barcelona, Spain. (2)
1,College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, China 2,Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China (1)
1. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK 2. Technical University, Berlin 13355, Germany (1)
1.Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom 2.Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany (1)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (1)
Bioinformatics (1)
Biological Sciences Division, Pacific Northwest National Laboratory (1)
College of Animal Science and Technology, Qingdao Agricultural University, China (1)
Departamento de Biología Celular. Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional.Avenida Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Alcaldía Gustavo A. Madero, Ciudad de México, Código Postal 07360. (1)
Department of Agricultural Chemistry, Edaphology and Microbiology, Microbiology area, Severo Ochoa building (C6), Agrifood Campus of International Excellence ceiA3, University of Córdoba, Córdoba, Spain (1)
Department of Life Science, National Taiwan University (1)
Department of Public Health and Medical Technology, Xiamen Medical College (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
INVESTIGADOR PRINCIPAL (1)
Institute of Molecular and Cellular Biology, Department of Life Science, National Taiwan University, Taipei, Taiwan (1)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (1)
Mass Spectrometry Facility Barts Cancer Institute Lab 1.01 1st floor Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Michael Swann Building Max Born Crescent The University of Edinburgh Edinburgh EH9 3BF (1)
National Taiwan University, Institute of Molecular & Cellular Biology (1)
PRBB, Institute of Evolutionary Biology (UPF-CSIC), Dr. Aiguader 88, 8003 Barcelona, Spain Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010, Barcelona, Spain Centro Nacional de Análisis Genómico (CNAG), Baldiri i Reixac 4, 08028 Barcelona, Spain Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain (1)
Pathology, Fundación Jiménez Díaz University Hospital Health Research Institute (IIS—FJD, UAM), Madrid 28040, Spain (1)
Professor of Pediatrics University of California San Francisco (1)
Professor. F.M. Kirby Neurobiology Center, Boston Children’s Hospital, Boston, MA, USA (1)
Sant Pau Memory Unit, Department of Neurology, Hospital de la Santa Creu i Sant Pau, Biomedical Research Institute Sant Pau (IIB Sant Pau), Universitat Autònoma de Barcelona, Barcelona, Spain (1)
Wellcome Centre for Cell Biology, University of Edinburgh Institute of Biotechnology, Technische Universität Berlin (1)
Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
Wellcome Trust Centre for Cell Biology, Institute of Cell Biology, University of Edinburgh University of Edinburgh | Michael Swann Building 4.18a | Max Born Crescent | Edinburgh EH9 3BF | phone: +44 (0) 131 651 7056 (1)
Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, UK Chair of Bioanalytics, Institute of Biotechnology, Technische Universitaet, Berlin, 13355 Berlin, Germany (1)

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Pancreatic islet expression profiling in diabetes prone C57BLKS/J mice vs C57BL6/J mice.

C57BLKS/J mice are susceptible to diabetes, because of islet dysfunction, whereas C57BL6/J mice are not. Differences in gene expression between the two strains may account for this sensitivity. Furthermore these differences may only be evident in the hyperstimulated (diabetic or hyperglycemic) state...

ORGANISM(S): Mus musculus

2008-12-30 | E-GEOD-11257 | biostudies-arrayexpress

Pancreatic islet expression profiling in diabetes-prone C57BLKS/J mice reveals transcriptional differences contributed by DBA loci, including Plagl1 and Nnt.

Not available

S-EPMC2642818 | biostudies-literature

Consumption of Foods Away from Home Is Associated with Lower Diet Quality Among Adults Living in Puerto Rico.

Not available

S-EPMC9763551 | biostudies-literature

Museomics Unveil the Phylogeny and Biogeography of the Neglected Juan Fernandez Archipelago Megalachne and Podophorus Endemic Grasses and Their Connection With Relict Pampean-Ventanian Fescues.

Not available

S-EPMC7333454 | biostudies-literature

Longitudinal association between adiposity measures and regression of prediabetes/diabetes.