Ma Song S - OmicsDI

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Unknown (3750)
Proteomics (103)
Transcriptomics (43)
Genomics (33)
Metabolomics (21)
Models (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (74)
Alteromonadales (74)
Bacteria (74)
Canis lupus familiaris (74)
Carya cathayensis (74)
Ectopseudomonas oleovorans CECT 5344 (74)
Ensifer adhaerens (74)
Enterococcus faecalis (74)
Globicatella sanguinis (74)
Halictus scabiosae (74)
Histomonas meleagridis (74)
Human immunodeficiency virus 1 (74)
Listeria monocytogenes (74)
Homo sapiens (66)
Mus musculus (10)
Glycine max (3)
Gallus gallus (3)
Oryza sativa (2)
Arabidopsis thaliana (2)
Bacillus sp. N16-5 (1)
Streptococcus pneumoniae R6 (1)
Citrus trifoliata (1)
Bacillus thuringiensis (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Drosophila melanogaster (1)
Escherichia coli (1)
Oryctolagus cuniculus (1)
Saccharomyces cerevisiae (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Mus musculus (1)

Repository

pride (74)
biostudies-arrayexpress (51)
EGA (24)
MetaboLights (21)
iProX (20)
MassIVE (8)
BioModels (2)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (21)
Epithelial cell (9)
Liver (5)
Plant cell (5)
Blood plasma (4)
Pheromone gland (3)
Shoot (3)
Adrenal adenoma cell (2)
Brain (2)
Kidney (2)
Leaf (2)
Root (2)
T cell (2)
Whole body (2)
Anther (1)
Blood serum (1)
Blood-brain barrier (1)
Bone marrow (1)
Breast cancer cell (1)
Cell suspension culture (1)
Cerebral cortex (1)
Cerebral cortex endothelial cell (1)
Fibroblast (1)
Floret (1)
Keratinocyte (1)
Lens cortex (1)
Lung (1)
Mature astrocyte (1)
Mature microglial cell (1)
Optic nerve (1)

Disease

Breast cancer (6)
Disease free (3)
Acute leukemia (2)
Colon cancer (2)
Hepatocellular carcinoma-non tumorous region (1)
Brain cancer (1)
Glioblastoma (1)
Hepatocellular carcinoma (1)
Myelodysplastic syndrome (1)
Pancreatic cancer (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (74)
Shotgun proteomics (45)
Mass spectrometry (16)
Gel-based experiment (13)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (5)
Mass spectrometry assay (3)
SWATH MS (3)
NMR spectroscopy (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Olink affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - (4)
Q Exactive (3)
Liquid Chromatography MS - alternating - hilic (2)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Xevo G2-S QTof (1)
Liquid chromatography MS/MS -Positive (1)
Liquid chromatography MS/MS - Negative (1)
Liquid chromatography MS/MS positive (1)
HPLC-LTQ-MS (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Bruker (1)
Xevo G2 QTOF (Waters) (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2021 (17)
2023 (16)
2024 (15)
2014 (14)
2017 (13)
2010 (10)
2025 (10)
2019 (10)
2022 (9)
2018 (9)
2015 (8)
2020 (8)
2013 (6)
2012 (5)
2011 (5)
2026 (5)
2016 (4)
2009 (1)
2008 (1)
2007 (1)

CHEBI ID

CHEBI:15428 (6)
CHEBI:15741 (6)
CHEBI:7916 (6)
CHEBI:17750 (6)
CHEBI:18012 (6)
CHEBI:32816 (6)
CHEBI:30769 (6)
CHEBI:16040 (5)
CHEBI:17724 (5)
CHEBI:6650 (5)
CHEBI:28044 (5)
CHEBI:16865 (5)
CHEBI:27266 (5)
CHEBI:18183 (5)
CHEBI:28997 (4)
CHEBI:17057 (4)
CHEBI:15584 (4)
CHEBI:15682 (4)
CHEBI:15918 (4)
CHEBI:17713 (4)
CHEBI:16311 (4)
CHEBI:16171 (4)
CHEBI:17013 (4)
CHEBI:17256 (4)
CHEBI:15713 (4)
CHEBI:17659 (4)
CHEBI:17822 (4)
CHEBI:18132 (4)
CHEBI:16344 (4)
CHEBI:16856 (4)

Metabolite Name

DCTP (4)
Glutathione (4)
UTP (4)
CTP (4)
Glycine (4)
Betaine (4)
Cellobiose (4)
Pyroglutamic acid (4)
CDP-ethanolamine (4)
Kynurenic acid (4)
DTMP (4)
N-Acetylputrescine (4)
NADH (4)
Methylmalonic acid (4)
Creatinine (4)
1-Methyladenosine (4)
Succinyl-CoA (3)
Malonyl-CoA (3)
Propionyl-CoA (3)
DATP (3)
Cholesteryl sulfate (3)
O-acetyl-L-serine (3)
Coenzyme A (3)
GTP (3)
S-adenosyl-L-homocysteine (3)
Oxaloacetate (3)
Acetyl-CoA (3)
Pyridoxine (3)
Biotin (3)
2,3-dihydroxybenzoic acid (3)

IsPrivate

False (2)

First Public Date

2013 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (20)
RNA-seq of coding RNA (8)
ChIP-seq (6)
Comparative genomic hybridization by array (5)
RNA-seq of non coding RNA (5)
Genotyping by array (3)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
Other (1)

Release Date

2025 (537)
2023 (443)
2024 (430)
2022 (423)
2021 (410)
2020 (330)
2019 (209)
2018 (190)
2017 (150)
2015 (139)
2016 (132)
2014 (85)
2026 (72)
2013 (70)
2012 (54)
2011 (34)
2010 (34)
2009 (23)
2008 (13)
2007 (7)
2006 (4)
2005 (3)
2002 (3)
2004 (2)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (2)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. (2)
Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (2)
Shanghai Hoogen Biotechnology Co., Ltd. (2)
Université libre de Buxelles (ULB), Laboratory of Stem Cells and Cancer, 808 route de Lennik, 1070 Brussels, Belgium ; WELBIO, Université Libre de Bruxelles (ULB), 1070 Bruxelles, Belgium (2)
the First Affiliated Hospital of Chongqing Medical University (2)
1) Vascular Biology Program, Boston Children's Hospital, Boston, MA, United States 2) Department of Surgery, Boston Children's Hospital and Harvard Medical School, Boston, MA, United States (1)
1. ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Melbourne, VIC 3010, Australia 2. Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94702, USA (1)
APAF, Macquarie University (1)
Associate Member, Hematological Malignancies Program St. Jude Children's Research Hospital Memphis-TN UA (1)
Australian Proteome Analysis Facility (1)
Baylor College of Medicine (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School Cancer Biology, Dana-Farber Cancer Institute (1)
Biological Sciences, University of Southampton (1)
Center for Bioanalysis, Division of Chemical and Medical Metrology, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea (1)
Center for Cancer Research, National Cancer Institute, National Institutes of Health (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)
Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, USA (1)
College of Agriculture/Hubei Key Laboratory of Waterlogging Disaster and Agricultural Use of Wetland, Yangtze University, Jingzhou, Hubei 434025, China (1)
College of Food Science and Technology, Nanjing Agricultural University, Nanjing, China (1)
College of Life Science in Sichuan University, Chengdu, China (1)
College of Pharmacy, Gachon University, 534-2 Yeonsu 3-dong, Yeonsu-gu, Incheon 406-799, Republic of Korea (1)
Department of Biochemistry and Molecular Biology and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, VIC 3010, Australia (1)
Department of Biology, Technion – Israel Institute of Technology, Haifa, Israel (1)
Department of Cardiology, Institute of Cardiovascular Diseases, First Affiliated Hospital of Dalian Medical University, Dalian, China (1)
Department of Human Anatomy, Histology, and Embryology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education) and State Key Laboratory of Natural and Biomimetic Drugs,Peking University Health Science Center, Beijing 100191, China. (1)