Macroalgae - OmicsDI

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Organisms

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Organisms

macroalgae metagenome (10)
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plant metagenome (2)
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Winogradskyella sp. PC D3.3 (1)

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Tissue

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Disease

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Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
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Agilent G2565CA microarray scanner system (Agilent technologies, Berkshire, UK). (1)
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Liquid Chromatography MS - positive (1)
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Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

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2014 (2)
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2010 (1)
2007 (1)
2021 (1)

CHEBI ID

CHEBI:28865 (4)
CHEBI:35038 (3)
CHEBI:16359 (3)
CHEBI:143745 (2)
CHEBI:182784 (2)
CHEBI:143757 (2)
CHEBI:195271 (2)
CHEBI:139138 (2)
CHEBI:34687 (2)
CHEBI:173703 (2)
CHEBI:27997 (2)
CHEBI:73858 (2)
CHEBI:34494 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:64563 (2)
CHEBI:27432 (2)
CHEBI:144719 (1)
CHEBI:144718 (1)
CHEBI:181874 (1)
CHEBI:195269 (1)
CHEBI:75567 (1)
CHEBI:195266 (1)
CHEBI:195267 (1)
CHEBI:195270 (1)
CHEBI:195272 (1)
CHEBI:191103 (1)
CHEBI:34686 (1)
CHEBI:181126 (1)
CHEBI:195264 (1)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Lactulose (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Taurocholic acid (2)
Elaidic acid (2)
9(10)-EpOME (2)
Adenosine (2)
Phenylalanine (2)
M370T362 (1)
M368T338 (1)
M344T346 (1)
M288T251 (1)
M258T251 (1)
M242T309 (1)
M230T356 (1)
(6Z,9Z,12Z,15Z)-tricosa-1,6,9,12,15-pentaene (1)
(6Z,9Z,12Z,15Z)-henicosa-1,6,9,12,15-pentaene (1)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)

First Public Date

2024 (41)
2025 (36)
2021 (33)
2022 (26)
2020 (24)
2023 (22)
2026 (21)
2019 (14)
2018 (14)
2017 (11)
2016 (6)
2013 (3)
2015 (2)
2014 (2)

Classification

bacteria (3)

Study type

Transcription profiling by array (9)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (1)

Release Date

2022 (113)
2021 (95)
2023 (92)
2024 (85)
2025 (83)
2019 (79)
2018 (62)
2020 (61)
2015 (36)
2017 (35)
2016 (35)
2014 (29)
2013 (15)
2026 (13)
2012 (8)
2010 (7)
2011 (5)
2007 (4)
2009 (2)
2008 (2)
2006 (1)
2005 (1)

Lab affiliation

Department of Molecular Ecology MPI for Marine Microbiology Celsiusstr. 1 D-28359 Bremen Germany (5)
Department of Biochemistry & Biotechnology, University of Thessaly, Biopolis, 41500, Larissa, Greece (1)
Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China (1)
Mass Spectrometry Centre, LAQV-REQUIMTE—Associated Laboratory for Green Chemistry of the Network of Chemistry and Technology, Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal (1)
Ocean University of China (1)
Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (1)
School of Chemistry & Biochemistry College of Sciences Georgia Institute of Technology (1)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (1)

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macroalgae metagenome

Macroalgae metagenome Targeted loci

PRJNA391388 | ENA

Bacterial epibionts of corsican macroalgae

PRJEB60225 | ENA

Unraveling the metabolic mechanisms of pioneer bacteria during the utilization of fresh macroalgae

We cultivated the flavobacterium Zobellia galactanivorans DsijT with fresh brown macroalgae with distinct chemical compositions. Its capacity to use macroalgae as the sole carbon source via the secretion of extracellular enzymes, leading to extensive tissue damages, highlights a sharing pioneer degr...

ORGANISM(S): Zobellia galactanivorans

2022-07-27 | GSE189322 | GEO

macroalgae metagenome

Comparison of macroalgal seed bank detected in various depth of urchin barren using DNA metabarcoding based on next-generation sequencing

PRJDB8204 | ENA

macroalgae metagenome

First trial of rapid detection of macroalgal seed bank on cobbles: application of DNA metabarcoding using next-generation sequencing

PRJDB7466 | ENA

macroalgae metagenome

Bacterial metagenomic catalogue of the macroalgae sequenced by the ALG-ALL-CODEmacro project

PRJNA1467733 | ENA

macroalgae metagenome