Mag - OmicsDI

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Unknown (1365)
Proteomics (547)
Genomics (405)
Transcriptomics (183)
Metabolomics (32)

Organisms

Homo sapiens (77)
Mus musculus (63)
Schizosaccharomyces pombe (10)
Saccharomyces cerevisiae (8)
Drosophila melanogaster (6)
Rattus norvegicus (6)
Caenorhabditis elegans (5)
Triticum aestivum (5)
Arabidopsis thaliana (3)
Tursiops aduncus (2)
Danio rerio (2)
Magnetospirillum gryphiswaldense (1)
Nannochloropsis oceanica (1)
Caenorhabditis briggsae (1)
Rhipicephalus microplus (1)
Pristionchus pacificus (1)
Populus tremuloides (1)
Nothobranchius furzeri (1)
Gossypium hirsutum (1)
Brassica juncea (1)
Dysidea avara (1)
Prunus dulcis (1)
Fusarium graminearum (1)
Neurospora crassa (1)
Macaca fascicularis (1)
Entamoeba histolytica (1)
Zea mays (1)
Setaria italica (1)
Bos taurus (1)
Glycine max (1)

Organisms

Sphagnum magellanicum (32)
Mus musculus (30)
Homo sapiens (15)
biogas fermenter metagenome (14)
soil metagenome (5)
hydrothermal vent metagenome (4)
hot springs metagenome (3)
wastewater metagenome (3)
marine metagenome (3)
Rattus norvegicus (3)
Candidatus Binatus sp. bin_3A (2)
Candidatus Electronema sp. VV (2)
freshwater metagenome (2)
goat gut metagenome (2)
sediment metagenome (2)
marine sediment metagenome (2)
metagenome (2)
Magnetococcus sp. MJ-1 (1)
Paucilactobacillus vaccinostercus (1)
Enterococcus italicus (1)
Marine Group I thaumarchaeote (1)
Phycisphaerales bacterium (1)
Epsilonproteobacteria bacterium N2O MAG (1)
Paramormyrops sp. MAG (1)
Nodosilinea sp. Bin4 (1)
Planctomycetota bacterium (1)
Candidatus Electronema sp. V4 (1)
Pseudomonadota bacterium (1)
Trachemys scripta (1)
Legionella feeleii (1)

Repository

pride (528)
ENA (361)
biostudies-arrayexpress (186)
MetabolomicsWorkbench (25)
NODE (22)
geo (19)
MassIVE (9)
MetaboLights (7)
jPOST (4)
PanoramaPublic (4)
iProX (2)

Tissue

Cell culture (105)
Epithelial cell (38)
Brain (31)
Blood plasma (22)
Liver (19)
Permanent cell line cell (18)
Colon (13)
Heart (13)
Hepatocyte (13)
Blood (12)
Bone marrow (11)
Kidney (10)
Primary cell (10)
T cell (10)
B cell (9)
Feces (6)
Blood (5)
Liver (4)
Bacterial cells (3)
B-cells (2)
Hep G2 cells (2)
Urine (2)
IPSC cells (1)
Whole animals (1)
Stomach (1)
Epithelial cells (1)
Cecum (1)
Kidney (1)
Lung (1)
Cultured cells (1)

Disease

Breast cancer (11)
Colon cancer (10)
Normal (9)
Disease free (8)
Alzheimer's disease (5)
Cardiovascular system disease (5)
COVID-19 (4)
Bacterial sepsis (4)
Brain small vessel disease (4)
Inflammatory bowel disease (3)
Cancer (3)
Acute leukemia (3)
Amyotrophic lateral sclerosis (3)
Cancer (3)
Chronic lymphocytic leukemia (3)
Colorectal cancer (3)
Lymphoma (3)
Neuroblastoma (3)
Irritable bowel syndrome (2)
Inflammatory bowel disease (1)
ER positive breast cancer (1)
Chloracne - MADISH (1)
Colon mucinous adenocarcinoma (NCI Metathesaurus CL029553) in DiseaseLocation rectosigmoid colon has DiseaseStaging T3N2M1 (1)
Healthy (1)
Infertility (1)
Reference (1)
Acute kidney injury (1)
NASH (1)
Diabetes (1)
Down syndrome (1)

Technology Type

Mass Spectrometry (553)
Shotgun proteomics (197)
Bottom-up proteomics (175)
Data-dependent acquisition (117)
Data-independent acquisition (96)
Affinity purification coupled with mass spectrometry proteomics (54)
ESI (24)
SWATH MS (21)
Metaproteomics (9)
Gel-based experiment (7)
DiaPASEF (6)
Mass spectrometry assay (5)
Top-down proteomics (5)
SRM/MRM (4)
EI (3)
All-ion fragmentation (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry (2)
Affinity proteomics (2)
APCI (1)
MSE (1)
Mass spectrometry imaging (1)
Olink affinity proteomics (1)
RNA mass spectrometry (1)

Instrument Platform

NextSeq 550 (8)
Illumina HiSeq 2000 (6)
Illumina HiSeq 2500 (3)
AB SOLiD 4 System (2)
Illumina MiSeq (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Orbitrap Astral (2)
Orbitrap Exploris 480 (2)
KAPA EvoPrep Kit (1)
-- (1)
Thermal cycler; magnetic separation rack; Qubit Fluorometer; Agilent TapeStation 4200 (1)
Microcentrifuge; magnetic separation rack; Qubit Flu/spectrophotometer; Agilent TapeStation 4200 (1)
Incubator shaker; spectrophotometer; Cmag measurement system; flow cytometer (1)
Element AVITI (1)
454 GS FLX Titanium (1)
Sequel (1)
GenePix Personal 4100A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
HiSeq X Ten (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 120 (1)
Orbitrap Fusion (1)

Publication Date

2025 (149)
2026 (142)
2024 (88)
2023 (71)
2022 (64)
2021 (38)
2013 (34)
2014 (25)
2012 (17)
2020 (17)
2016 (16)
2015 (16)
2008 (15)
2019 (12)
2011 (12)
2010 (11)
2009 (9)
2018 (8)
2007 (8)
2017 (4)
2005 (1)

CHEBI ID

CHEBI:27551 (2)
CHEBI:72956 (2)
CHEBI:18394 (2)
CHEBI:18095 (2)
CHEBI:16440 (2)
CHEBI:16765 (2)
CHEBI:15901 (2)
CHEBI:17992 (2)
CHEBI:16708 (2)
CHEBI:16244 (2)
CHEBI:37023 (2)
CHEBI:17748 (2)
CHEBI:25017 (2)
CHEBI:18347 (2)
CHEBI:16411 (2)
CHEBI:17306 (2)
CHEBI:16704 (2)
CHEBI:27389 (2)
CHEBI:15891 (2)
CHEBI:17509 (2)
CHEBI:15698 (2)
CHEBI:16040 (2)
CHEBI:17172 (2)
CHEBI:17568 (2)
CHEBI:15741 (2)
CHEBI:16750 (2)
CHEBI:18012 (2)
CHEBI:17562 (2)
CHEBI:30915 (2)
CHEBI:16335 (2)

Metabolite Name

Adenosine (5)
Indoline (3)
Isoleucine (3)
Cytidine (3)
5,6-DIHYDROURACIL (2)
Palmitoleic Acid (2)
DEOXYCARNITINE (2)
4-AMINOBUTANOATE (2)
ALPHA-AMINOADIPATE (2)
DEOXYCYTIDINE (2)
THYMIDINE (2)
SUCROSE (2)
4-HYDROXY-L-PROLINE (2)
Cystathionine (2)
Lotaustralin (2)
Uracil (2)
Pyroglutamic acid (2)
6-Hydroxymelatonin (2)
NAD (2)
Choline Glycerophosphate (2)
Deoxyadenosine (2)
Acetylcarnitine (2)
Acetylcholine (2)
Choline (2)
Gamma-Glutamylleucine (2)
Taurine (2)
Phenylpyruvic acid (2)
Pantothenic acid (2)
Gamma-Glutamylmethionine (2)
Malic acid (2)

First Public Date

2026 (75)
2024 (57)
2025 (51)
2023 (49)
2018 (34)
2020 (30)
2022 (22)
2021 (20)
2019 (14)
2017 (5)
2014 (3)
2016 (1)

Classification

bacteria (11)
fungi (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
2x(15)N labeled L-lysine (1)
4'-dihydroxyphenylalanine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (72)
RNA-seq of coding RNA (71)
ChIP-seq (15)
CUT&RUN (9)
RNA-seq of non coding RNA (4)
Comparative genomic hybridization by array (3)
Other (3)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Methylation profiling by array (1)

Release Date

2022 (203)
2023 (193)
2025 (177)
2024 (166)
2021 (154)
2020 (136)
2019 (92)
2018 (69)
2014 (44)
2013 (44)
2016 (40)
2017 (36)
2015 (32)
2026 (31)
2012 (30)
2011 (22)
2010 (22)
2008 (21)
2009 (15)
2007 (12)
2006 (3)
2004 (3)
2005 (2)
2002 (2)
2003 (1)
2000 (1)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (8)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (7)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (7)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (6)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (5)
Baker Heart & Diabetes Institute (4)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (4)
Institute for Genetics, University of Cologne, 50674 Cologne, Germany (4)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne Germany (4)
The University of Melbourne (4)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (3)
Laboratory of RNA Processing and Decay, Institute of Biochemistry and Biophysics, Warsaw, Poland (3)
Max Perutz Labs, Vienna, Austria (3)
Max-Planck-Institute for Biology of Ageing Joseph-Stelzmann-Str. 9b 50931 Cologne, Germany (3)
Professor at Department of Pharmacy, Drug Delivery, Uppsala University (3)
University of Dundee, School of Life Sciences (3)
Baker Heart & Diabetes Inst. (2)
Baker Heart and Diabetes Institute (2)
CCBIO, Department of Clinical Medicine, Faculty of Medicine, University of Bergen, Bergen, Norway (2)
Calico Life Sciences (2)
Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland (2)
College of Plant Protection, Northwest A&F University (2)
DZNE Munich Neuroproteomics Feodor-Lynen Str. 17 81377 Munich Germany (2)
DZNE Munich Neuroproteomics Feodor-Lynen-Str. 17 81377 Munich Germany (2)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria, Australia. (2)
Department of Biomedical Sciences, University of Copenhagen, Denmark (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (2)
Department of Immunobiology, University of Lausanne, Switzerland (2)
Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)

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Pseudomonas aeruginosa strain:MAG | isolate:MAG

Pseudomonas aeruginosa strain:MAG | isolate:MAG Genome sequencing

PRJNA1217903 | ENA

Staphylococcus aureus strain:MAG | isolate:MAG

Staphylococcus aureus strain:MAG | isolate:MAG Genome sequencing

PRJNA1217899 | ENA

Vreelandella venusta strain:MAG | isolate:MAG

Vreelandella venusta strain:MAG | isolate:MAG Genome sequencing

PRJNA760969 | ENA

Epsilonproteobacteria bacterium N2O MAG

Epsilonproteobacteria bacterium N2O MAG Genome sequencing

PRJNA432117 | ENA

HCT 116 cells expressing Fucci (fluorescent ubiquitination-based cell cycle indicator); G1 phase vs. S/G2/M phase

Fucci-expressing HCT116 were inoculated into subcutaneous tissue or cecum of NOD/SCID mice. Four weeks after inoculation, Fucci green (mAG; S/G2/M) and red (mKO2;G1) expressing cells were isolated from implanted tumors by FACSAria sorting (BD, Biosciences). Comparative analyses among green and red c...

ORGANISM(S): Homo sapiens

2014-01-09 | E-GEOD-34940 | biostudies-arrayexpress

hot spring Ammoxidation MAG

hot spring Ammoxidation MAG Metagenomic assembly

PRJNA1081759 | ENA

Jaspinella sp. MAG genome

Jaspinella sp. MAG Genome sequencing

PRJNA1138782 | ENA

Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome

Membrane-bound particles in plasma are composed of exosomes, microvesicles, and apoptotic bodies and represent ~1-2% of the total protein composition. Proteomic interrogation of this subset of plasma proteins augments the representation of tissue-specific proteins, representing a “liquid biopsy,” wh...

ORGANISM(S): Homo Sapiens

PXD042947 | panorama

Biogas fermenter metagenome MAG sludge_Hungateiclostridiaceae_5

PRJNA611073 | ENA

Biogas fermenter metagenome MAG sludge_Peptococcaceae_8

PRJNA611074 | ENA