Maier Tobias T - OmicsDI

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Transcriptomics (3)
Models (1)
Metabolomics (1)
Proteomics (1)

Organisms

Mus musculus (2)
Mycoplasmoides pneumoniae (1)
Mycoplasmoides pneumoniae M129 (1)
Homo sapiens (1)
Strongyloides stercoralis (1)
Apteronotus leptorhynchus (1)
Anoxybacteroides tepidamans (1)
Paenibacillus alvei (1)
Eunicella cavolini (1)
Cereibacter sphaeroides (1)
Mycobacterium tuberculosis OFXR-32 (1)
Lumpy skin disease virus (1)
Cavia (1)
Caballeronia mineralivorans PML1(12) (1)
Influenza A virus (A/WSN/1933(H1N1)) (1)
Botryllus schlosseri (1)
Halorhodospira halophila (1)
Octopodiformes (1)
environmental samples (1)
Bacteroides fragilis 638R (1)
Pyrococcus abyssi (1)
Pseudomonas putida F1 (1)
Dendroaspis polylepis polylepis (1)
Blumeria hordei DH14 (1)
Riptortus pedestris (1)
Oreochromis mossambicus (1)
Giardia duodenalis (1)
Acanthoscurria gomesiana (1)
Acinetobacter baumannii D1279779 (1)
Tradescantia spathacea (1)

Repository

biostudies-arrayexpress (3)
BioModels (1)
MetaboLights (1)
pride (1)

Tissue

Permanent cell line cell (1)
Cell culture (1)

Technology Type

Mass spectrometry (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Flow injection analysis MS - (1)

Publication Date

2010 (2)
2005 (1)
2013 (1)
2022 (1)
2019 (1)

CHEBI ID

CHEBI:33563 (1)
CHEBI:58774 (1)
CHEBI:37393 (1)
CHEBI:17666 (1)
CHEBI:16298 (1)
CHEBI:16899 (1)
CHEBI:16139 (1)
CHEBI:28494 (1)
CHEBI:29165 (1)
CHEBI:17517 (1)
CHEBI:17962 (1)
CHEBI:16018 (1)
CHEBI:16024 (1)
CHEBI:29183 (1)
CHEBI:29182 (1)
CHEBI:29181 (1)
CHEBI:29180 (1)
CHEBI:29179 (1)
CHEBI:29177 (1)
CHEBI:29184 (1)
CHEBI:29173 (1)
CHEBI:29185 (1)
CHEBI:29169 (1)
CHEBI:29174 (1)
CHEBI:29178 (1)
CHEBI:29176 (1)
CHEBI:29175 (1)
CHEBI:29168 (1)
CHEBI:29167 (1)
CHEBI:29186 (1)

Metabolite Name

5-Androstene-3alpha-16b,17b-triol (1)
3-(4,7-dimethoxy-2H-1,3-benzodioxol-5-yl)propanoic acid (1)
3-(6,7-dimethoxy-2H-1,3-benzodioxol-5-yl)-2-hydroxypropanal (1)
3-(6,7-dimethoxy-2H-1,3-benzodioxol-5-yl)propanoic acid (1)
3-(6,7-dimethoxy-2H-1,3-benzodioxol-5-yl)-3-hydroxypropanal (1)
Threoninyl-Glutamine (1)
S-Phenylmercapturic acid (1)
4-(4-hydroxy-3,5-dimethoxyphenyl)butan-2-one (1)
4-hydroxy-5-(3-methoxyphenyl)pentanoic acid (1)
7-methoxy-2,2-dimethyl-3,4-dihydro-2H-1-benzopyran-4,5-diol (1)
2-[(3,3-dimethyloxiran-2-yl)methyl]-5-methoxybenzene-1,3-diol (1)
2-(4-hydroxy-3-methylbut-2-en-1-yl)-5-methoxybenzene-1,3-diol (1)
2,3,5-trimethoxy-6-methylphenol (1)
4-hydroxy-2,3-dimethoxybenzoic acid (1)
3-hydroxy-2,4-dimethoxybenzoic acid (1)
2-hydroxy-2-(2-hydroxy-4-methoxyphenyl)acetic acid (1)
2-(3,4-dihydroxy-5-methoxyphenyl)acetic acid (1)
3-(3-methoxyphenyl)-2-oxopropanoic acid (1)
(2Z)-2-hydroxy-3-(3-methoxyphenyl)prop-2-enoic acid (1)
3-(4-methoxyphenyl)oxirane-2-carboxylic acid (1)
(2Z)-2-hydroxy-3-(4-methoxyphenyl)prop-2-enoic acid (1)
3-(4-methoxyphenyl)-2-oxopropanoic acid (1)
3-(3-hydroxyphenyl)oxirane-2-carboxylic acid (1)
3-(2-hydroxyphenyl)oxirane-2-carboxylic acid (1)
3-(4-hydroxyphenyl)oxirane-2-carboxylic acid (1)
N-benzoylglycinate (1)
3-(4-methoxyphenyl)oxirane-2-carbaldehyde (1)
3-(2-hydroxy-4-methoxyphenyl)prop-2-enal (1)
3-(2-hydroxy-3-methoxyphenyl)prop-2-enal (1)
2-methyl-3-phenyloxirane-2-carboxylic acid (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Study type

Transcription profiling by array (3)

Release Date

2010 (2)
2013 (1)

Lab affiliation

Department of Biochemistry and Synthetic Metabolism, Max Planck Institute for terrestrial Microbiology, Marburg, Germany (1)

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Wodke2013 - Genome-scale constraint-based model of M.pneumoniae energy metabolism (iJW145)

Wodke2013 - Genome-scale constraint-based model of M.pneumoniae energy metabolism (iJW145) A new genome-scale metabolic reconstruction of M.pneumoniae is used in combination with external metabolite measurement and protein abundance measurements to quantitatively explore the energ...

2005-01-01 | MODEL1301290000 | BioModels

Consistency across multi-omics layers in a drug-perturbed gut microbial community

Multi-omics analyses are increasingly employed in microbiome studies to obtain a holistic view of molecular changes occurring within microbial communities exposed to different conditions. However, it is not always clear to what extent each omics data type contributes to our understanding of the comm...

2022-12-08 | MTBLS3129 | MetaboLights

Transcription profiling by array of liver from C57BL6 mice transfected with AAV8 vectors expressing either GFP or human macrophage inhibitory factor (MIF) or none (PBS).

MIF is a general mediator of inflammatory responses and is associated with several inflammatory diseases including atherosclerosis. Therefore MIF is currently investigated as a therapeutic target for atherosclerosis. Generation of AAV8 vectors expressing human MIF was initiated to overexpress human ...

ORGANISM(S): Mus musculus

2013-03-07 | E-MTAB-1019 | biostudies-arrayexpress

Marine Proteobacteria metabolise glycolate via the β-hydroxyaspartate cycle

One of the most abundant organic carbon sources in the ocean is glycolate, a compound that is commonly secreted by marine phytoplankton resulting in an estimated annual flux of one petagram of glycolate in marine environments. While it is generally accepted that glycolate is oxidized to glyoxylate b...

ORGANISM(S): Paracoccus denitrificans PD1222

2019-10-14 | PXD013274 | Pride

Paracoccus denitrificans

Ovalbumin sensitized and challenged induces differential gene expression in mouse lungs

To gain insight into the promoting effect of ultrafine particle inhalation on development and progression of allergic asthma, we selected an experimental approach involving exposure to ultrafine carbon particles (UCP) and gene expression profiling of lungs from mice with experimental, ovalbumin indu...