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Proteomics (97)
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Homo sapiens (122)
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Arabidopsis thaliana (5)
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Caenorhabditis elegans (2)
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cellular organisms (1)

Organisms

Bos grunniens (1)

Repository

biostudies-arrayexpress (102)
pride (65)
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Tissue

Cell culture (14)
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Disease

Porphyria NOS (2)
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T. circumcincta infection (1)
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Normal (1)
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Disease free (1)
Esophagus adenocarcinoma (1)
Long COVID (1)
Papillary renal cell carcinoma (1)
Rheumatoid arthritis (1)
Sarcoidosis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (65)
Shotgun proteomics (45)
Mass spectrometry (13)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (6)
Data-dependent acquisition (4)
Data-independent acquisition (4)
NMR spectroscopy (3)
Top-down proteomics (2)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II, Affymetrix U219 (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Illumina MiSeq, Illumina Genome Analyzer IIx (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (8)
Q Exactive (8)
Liquid Chromatography MS - positive - reverse phase (7)
Orbitrap Fusion Lumos (4)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Q Exactive HF (2)
Direct infusion MS - negative (2)
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Axon GenePix 4000A scanning hardware (1)
Illumina iScan (1)
Vortex (1)
NextSeq 2000 (1)
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Illumina HiSeq 2500 (1)
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TripleTOF 6600 (1)
Bruker (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS – positive (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)

Publication Date

2021 (26)
2024 (18)
2023 (18)
2020 (17)
2022 (15)
2013 (14)
2010 (13)
2014 (12)
2011 (11)
2015 (10)
2017 (9)
2012 (8)
2025 (7)
2016 (7)
2008 (7)
2026 (6)
2019 (6)
2018 (5)
2005 (4)
2007 (4)
2009 (3)
2004 (1)

UNIPROT ID/AC

Q9GRG6 (5)
35KD_MYCTU (1)
3BHS_MYCTU (1)
3MGH_MYCTU (1)
6PGL_MYCTU (1)
83332.Rv1180 (1)
A0A1S3CTQ6_DIACI (1)
A0A1S3CU82_DIACI (1)
A0A1S3CUK5_DIACI (1)
A0A1S3CUN3_DIACI (1)
A0A1S3CUN9_DIACI (1)
A0A1S3CVR8_DIACI (1)
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A0A1S3CVX0_DIACI (1)
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A0A1S3CWH8_DIACI (1)
A0A1S3CWL5_DIACI (1)
A0A1S3CWM4_DIACI (1)
A0A1S3CWQ4_DIACI (1)
A0A1S3CWY8_DIACI (1)
A0A1S3CX64_DIACI (1)
A0A1S3CXA8_DIACI (1)
A0A1S3CXH2_DIACI (1)
A0A1S3CYI0_DIACI (1)
A0A1S3CYI8_DIACI (1)
A0A1S3CZ97_DIACI (1)
A0A1S3CZC3_DIACI (1)
A0A1S3CZG3_DIACI (1)
A0A1S3CZL5_DIACI (1)

CHEBI ID

CHEBI:17234 (11)
CHEBI:25094 (8)
CHEBI:13389 (6)
CHEBI:14336 (6)
CHEBI:15361 (6)
CHEBI:15379 (6)
CHEBI:15422 (6)
CHEBI:16027 (6)
CHEBI:16526 (6)
CHEBI:16761 (6)
CHEBI:16908 (6)
CHEBI:17138 (6)
CHEBI:17754 (6)
CHEBI:17794 (6)
CHEBI:18021 (6)
CHEBI:28874 (6)
CHEBI:40595 (6)
CHEBI:4170 (6)
CHEBI:57642 (6)
CHEBI:16474 (5)
CHEBI:17842 (5)
CHEBI:18009 (5)
CHEBI:35490 (5)
CHEBI:48928 (5)
CHEBI:58121 (5)
CHEBI:58273 (5)
CHEBI:28757 (2)
CHEBI:33942 (2)
CHEBI:33842 (1)
CHEBI:57622 (1)

Metabolite Name

Phenylalanine (5)
Alanine (4)
Creatinine (4)
Glutamine (4)
Glycine (4)
Isoleucine (4)
Leucine (4)
Serine (4)
Threonine (4)
Tyrosine (4)
Valine (4)
Adenine (3)
Alanine (3)
Arginine (3)
Betaine (3)
Carnitine (3)
Creatine (3)
Glucose (3)
Glucose (3)
Glutamine (3)
Glycerol (3)
Glycine (3)
Histidine (3)
Isoleucine (3)
Lysine (3)
Mannose (3)
Ornithine (3)
Phenylalanine (3)
Tyrosine (3)
Valine (3)

IsPrivate

False (7)

Model Flag

Non Kinetic (1)

First Public Date

2022 (1)

Modelling Approach

Ordinary differential equation model (7)

Study type

Transcription profiling by array (62)
RNA-seq of coding RNA (15)
RNA-seq of coding RNA from single cells (5)
Comparative genomic hybridization by array (4)
Transcription profiling by SAGE (2)
ChIP-seq (2)
DNA-seq (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Single nucleus RNA sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (48)
2022 (46)
2024 (45)
2023 (39)
2025 (38)
2020 (32)
2016 (25)
2019 (22)
2015 (21)
2018 (20)
2014 (20)
2013 (19)
2017 (18)
2011 (18)
2010 (16)
2012 (12)
2008 (9)
2026 (6)
2009 (6)
2007 (6)
2005 (3)
2004 (1)

Lab affiliation

Systems Biology Ireland, University College Dublin (3)
University of Edinburgh (3)
Agronomy College, Henan Agricultural University, China (2)
South China Agricultural University (2)
Tianjin Medical University General Hospital (2)
Biologie des interactions hôte-parasite Institut Pasteur (1)
Boston University School of Medicine (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Center for Integrative Genomics, University of Lausanne, Switzerland (1)
Center for Molecular Medicine and Genetics, Wayne State University, Detroit, MI 48201, USA (1)
College of Plant Science and Technology, Huazhong Agricultural University (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
David Meierhofer, MS facility, Max Planck Institute for Molecular Genetics, Berlin-Dahlem, Germany ( lab head ) (1)
Department of Animal Sciences, Robert H. Smith Faculty of Agriculture, Food and Environment, the Hebrew University, Rehovot 76100, Israel Center of Excellence in Agriculture and Environmental Health, the Hebrew University, Rehovot 76100, Israel (1)
Department of Biochemistry & Pharmacology, University of Melbourne, Australia (1)
Department of Biochemistry, Vanderbilt University, USA (1)
Department of General, Visceral- and Transplantation Surgery, RWTH University Hospital, Pauwelsstraße 30, 52074 Aachen, Germany (1)
Department of Internal Medicine, Division of Endocrinology and Metabolism, Carver College of Medicine, University of Iowa, Iowa City, Iowa, 52242 USA (1)
Department of Physiology and Biophysics, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte-MG, Brazil. (1)
Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent, Belgium (1)
Division of Neuroscience, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, M13 9PT, UK. Geoffrey Jefferson Brain Research Centre, The Manchester Academic Health Science Centre, Northern Care Alliance NHS Group, University of Manchester, Manchester, M13 9PT, UK. The Lydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester, M13 9PT, UK. (1)
Dr. Alexander Schmidt Proteomics Core Facility Biozentrum, University of Basel Klingelbergstrasse 50/70 CH-4056 Basel / Switzerland (1)
Dr. Pradip Behare Scientist- Department of Microbiology National Dairy Research Institute Karnal - 132001 Haryana, India (1)
Exp. Neurology, Goethe University Medical School, Frankfurt am Main, Germany (1)
Faculty of Chemistry and Pharmacy, Ludwig-Maximilians-Universität München, Germany (1)
Faculty of Medicine, Institute of Biochemistry II, Goethe University, 60590 Frankfurt am Main, Germany. Frankfurt Cancer Institute, Goethe University, 60596 Frankfurt am Main, Germany. Cardio-Pulmonary Institute, Goethe University, 60590 Frankfurt am Main, Germany (1)
Goethe University Frankfurt, University Hospital, Clinic of Neurology, Experimental Neurology, Heinrich- Hoffmann-Str. 7, 60528 Frankfurt am Main, Germany (1)
Group Leader, GIMM, Lisbon, Portugal (1)
Gulbenkian Institute for Molecular Medicine (GIMM), Lisbon, Portugal (1)

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Dialysate calcium, alfacalcidol, and clinical outcomes: A post-hoc analysis of the J-DAVID trial.

Not available

S-EPMC9451061 | biostudies-literature

Fasting upregulates the monocarboxylate transporter Mct1 at the rat blood-brain barrier through Ppar d activation

Fasting is increasingly recognized as a potential therapeutic intervention in the field of neurology and psychiatry. However, its impact upon the blood-brain barrier (BBB), which strictly regulates the cerebral uptake of a wide range of endogenous compounds and drugs, is unknown. In this study we us...

ORGANISM(S): Cellular Organisms

2024-08-15 | PXD044587 | JPOST Repository

Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease

Gene expression profile in circulating leukocytes identifies patients with coronary artery disease Peter Sinnaeve, Mark Donahue, Peter Grass, Jacky Vonderscher, David Seo, Pascal Goldschmidt, Christopher Granger Department of Medicine, Duke University, Durham, NC, USA, Novartis Institute for Biome...

ORGANISM(S): Homo sapiens

2008-10-31 | E-GEOD-12288 | biostudies-arrayexpress

Health TAPESTRY Ontario: protocol for a randomized controlled trial to test reproducibility and implementation.

Not available

S-EPMC7427958 | biostudies-literature

Versatile use of microliths as a technological advantage in the miniaturization of Late Pleistocene toolkits: The case study of Neve David, Israel.

Not available

S-EPMC7269238 | biostudies-literature

The implementation and validation of the NoMAD during a complex primary care intervention.

Not available

S-EPMC9206734 | biostudies-literature

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D (with ATP:ADP antiporter)

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D (with ATP:ADP antiporter) There are six models (Model A, B, C, C-fruc, D, D-fruc) described in the paper. Model A ( BIOMD0000000513 ) is the model developed originally by Achar et al. ...

2024-09-02 | BIOMD0000000511 | BioModels

Oral dysbiosis initiates periodontal disease in experimental kidney disease

BACKGROUND AND HYPOTHESIS: It is presently unclear why there is a high prevalence of periodontal disease in individuals living with chronic kidney disease. Whilst some have argued that periodontal disease causes chronic kidney disease, we hypothesized that alterations in saliva ...

2025-09-04 | MTBLS1833 | MetaboLights

Effect of Oral Alfacalcidol on Clinical Outcomes in Patients Without Secondary Hyperparathyroidism Receiving Maintenance Hemodialysis: The J-DAVID Randomized Clinical Trial.

Not available

S-EPMC6583075 | biostudies-literature

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D in fructose medium (with ATP:ADP antiporter)

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D in fructose medium (with ATP:ADP antiporter) There are six models (Model A, B, C, C-fruc, D, D-fruc) described in the paper. Model A ( BIOMD0000000513 ) is the model developed original...

2024-09-02 | BIOMD0000000516 | BioModels

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BACKGROUND AND HYPOTHESIS: It is presently unclear why there is a high prevalence of periodontal disease in individuals living with chronic kidney disease. Whilst some have argued that periodontal disease causes chronic kidney disease, we hypothesized that alterations in saliva ...

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