Mammalia - OmicsDI

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Transcriptomics (1264)
Unknown (427)
Genomics (278)
Proteomics (109)
Metabolomics (18)
Other (3)
Multiomics (1)

Organisms

Mus musculus (642)
Homo sapiens (272)
Drosophila melanogaster (52)
Danio rerio (47)
Gallus gallus (41)
Arabidopsis thaliana (40)
Rattus norvegicus (31)
Caenorhabditis elegans (22)
Sus scrofa (21)
Bos taurus (20)
Saccharomyces cerevisiae (17)
Schizosaccharomyces pombe (13)
Macaca mulatta (12)
Oncorhynchus mykiss (11)
Monodelphis domestica (7)
Ovis aries (7)
Xenopus laevis (6)
Candida albicans (6)
Canis lupus familiaris (6)
Trypanosoma brucei brucei (5)
Macaca fascicularis (5)
Bombyx mori (4)
Toxoplasma gondii (4)
Bifidobacterium breve UCC2003 (3)
Ambystoma mexicanum (3)
Mus musculus x Mus spretus (3)
Ornithorhynchus anatinus (3)
Equus caballus (3)
Heterocephalus glaber (3)
Sminthopsis crassicaudata (2)

Organisms

Mammalia (71)
Callithrix jacchus (2)
Barbastella darjelingensis (1)
Crocidura sp. n. QW-2021 (1)
Murina shuipuensis (1)
Harpiocephalus harpia (1)
Soricidae gen. n. sp. a MTS-2023 (1)
Chiroptera (1)
museum specimen metagenome (1)
milk metagenome (1)
skin metagenome (1)
Canis lupus familiaris (1)
gut metagenome (1)
Sus scrofa (1)
Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (1393)
ENA (107)
MassIVE (45)
pride (34)
EGA (26)
jPOST (14)
MetaboLights (13)
PAXDB (9)
geo (8)
NODE (8)
iProX (7)
GNPS (5)
EVA (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Bone (5)
Cell culture (5)
Embryo (3)
Brain (3)
Ear (2)
Epithelial cell (2)
Fibroblast (2)
Mammary gland (1)
Antler (1)
Blood plasma (1)
Cardiac muscle cell (1)
Cerebrospinal fluid (1)
Early embryonic cell (1)
Epidermis (1)
Hair (1)
Hair shaft (1)
Kidney (1)
Milk (1)
Milk fat (1)
Permanent cell line cell (1)
Saliva (1)
Seminal plasma (1)
Skin (1)
Tooth (1)
Urine (1)
Whole body (1)

Disease

Disease free (2)
Hypotension (1)
Healthy (1)
Osteocytes/osteoblasts (1)
NF1 atypical neurofibroma (1)
Not infected (1)
Normal (1)
Not Available (1)
Cardiovascular system disease (1)
Fanconi anemia complementation group A (1)
Infertility (1)
Influenza (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (21)
Mass spectrometry (9)
Bottom-up proteomics (5)
Gel-based experiment (5)
NMR spectroscopy (3)
Affinity purification coupled with mass spectrometry proteomics (3)
ILLUMINA, Illumina HiSeq 2000 (2)
Mass spectrometry assay (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina Genome Analyzer, Illumina HiSeq 2000, Illumina MiSeq, Affymetrix_U133plus2- (1)
Data-independent acquisition (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (23)
NextSeq 550 (21)
Illumina HiSeq 2500 (21)
Illumina HiSeq 4000 (15)
Q Exactive (11)
Illumina NovaSeq 6000 (9)
NextSeq 500 (5)
HiSeq X Ten (3)
Illumina MiSeq (3)
Chromium 10x (2)
High resolution C. scanner (2)
Sony SH800 (2)
Illumina Genome Analyzer IIx (2)
Illumina NovaSeq X (2)
Illumina HiSeq 1500 (2)
Eppendorf EpMotion 5073m pipetting robot (1)
DNBSEQ-G400 FAST (1)
DNBSEQ-G50 (1)
Illumina HiSeq X-ten (1)
Axon GenePix 4000A scanning hardware (1)
Axon 4000B (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Axon- GenePix4000B (1)
ScanArray 4000XL [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
Axon GenePix 4000B scanning hardware (1)
N/A (1)
Curie computer cluster (1)
DNBSEQ-G400 (1)
BGISEQ-500 (1)

Publication Date

2014 (198)
2013 (183)
2010 (182)
2015 (171)
2012 (158)
2011 (127)
2016 (97)
2008 (74)
2009 (69)
2007 (34)
2021 (33)
2022 (27)
2020 (27)
2023 (26)
2025 (19)
2019 (16)
2018 (16)
2006 (16)
2024 (14)
2017 (13)
2026 (11)
2005 (9)
2004 (2)

UNIPROT ID/AC

10090.ENSMUSP00000048857 (6)
10090.ENSMUSP00000079727 (6)
10090.ENSMUSP00000080088 (6)
10090.ENSMUSP00000083973 (6)
10090.ENSMUSP00000088281 (6)
10090.ENSMUSP00000088285 (6)
10090.ENSMUSP00000089293 (6)
10090.ENSMUSP00000089300 (6)
10090.ENSMUSP00000089335 (6)
10090.ENSMUSP00000089339 (6)
10090.ENSMUSP00000089345 (6)
10090.ENSMUSP00000089346 (6)
10090.ENSMUSP00000090897 (6)
10090.ENSMUSP00000095287 (6)
10090.ENSMUSP00000095794 (6)
10090.ENSMUSP00000100034 (6)
10090.ENSMUSP00000100581 (6)
10090.ENSMUSP00000100738 (6)
10090.ENSMUSP00000105709 (6)
10090.ENSMUSP00000113068 (6)
10090.ENSMUSP00000123410 (6)
10090.ENSMUSP00000124509 (6)
10090.ENSMUSP00000136358 (6)
1433E_MOUSE (6)
2AAA_MOUSE (6)
3HIDH_MOUSE (6)
6PGL_MOUSE (6)
A1AT1_MOUSE (6)
AATC_MOUSE (6)
AATM_MOUSE (6)

CHEBI ID

CHEBI:26986 (5)
CHEBI:26271 (4)
CHEBI:16811 (4)
CHEBI:28044 (4)
CHEBI:27266 (4)
CHEBI:15891 (4)
CHEBI:29016 (4)
CHEBI:17822 (3)
CHEBI:18132 (3)
CHEBI:25094 (3)
CHEBI:22660 (3)
CHEBI:22653 (3)
CHEBI:18186 (3)
CHEBI:28300 (3)
CHEBI:18257 (3)
CHEBI:16750 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:15428 (3)
CHEBI:7916 (3)
CHEBI:18211 (3)
CHEBI:16704 (3)
CHEBI:16027 (3)
CHEBI:27897 (3)
CHEBI:17596 (3)
CHEBI:16562 (2)
CHEBI:24266 (2)
CHEBI:27997 (2)
CHEBI:32365 (2)
CHEBI:15611 (2)

Metabolite Name

Undecanedioic acid (4)
L-Tryptophan (4)
Inosinic acid (3)
3-Methoxytyramine (3)
Muramic acid (3)
Cuminaldehyde (3)
L-Aspartic acid (3)
Ornithine (3)
1,11-Undecanedicarboxylic acid (3)
Palmitoylcarnitine (3)
Methionine sulfoxide (3)
N-Acetylneuraminic acid (3)
Taurine (3)
Phenylacetylglycine (3)
Guanosine (3)
L-Tyrosine (3)
L-Phenylalanine (3)
Hypoxanthine (3)
(2S,3S,4S,5R)-3,4,5-Trihydroxy-6-sulfooxyoxane-2-carboxylic acid (2)
N-Biotinyl-4-aminobenzoic acid (2)
2-Fluoro-2',3'-dideoxyadenosine (2)
5-[(3S)-1,2-Dithiolan-3-yl]pentanoylcarnitine (2)
4-Aminohex-5-ynoic acid (2)
4-[(2R,5R)-5-(6-Aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]butanamide (2)
L-Proline, 1-(2-methyl-3-(methylthio)-1-oxopropyl)-, (S)- (2)
Tfllr-NH2 (2)
2,3-Dihydroxypropyl 4-phenylbutanoate (2)
MG(6 keto-PGF1alpha/0:0/0:0) (2)
MG(P-18:0/0:0/0:0) (2)
PE(15:0/20:3(6,8,11)-OH(5)) (2)

First Public Date

2025 (27)
2024 (16)
2026 (13)
2023 (13)
2020 (10)
2021 (6)
2017 (4)
2013 (4)
2019 (3)
2015 (3)
2014 (3)
2022 (2)
2016 (2)
2018 (1)

Study type

Transcription profiling by array (677)
RNA-seq of coding RNA (292)
ChIP-seq (107)
RNA-seq of non coding RNA (66)
Other (46)
ChIP-chip by tiling array (31)
Methylation profiling by high throughput sequencing (31)
Unknown experiment type (25)
Comparative genomic hybridization by array (21)
Methylation profiling by array (15)
RNA-seq of coding RNA from single cells (15)
ChIP-chip by array (10)
Animal - Single-cell sequencing (6)
Transcription profiling by tiling array (6)
Transcription profiling by SAGE (5)
RNAi profiling by array (5)
DNA-seq (5)
Animal - High-throughput sequencing (4)
Cell line - High-throughput sequencing (3)
Genotyping by array (2)
Bisulfite-seq (2)
ATAC-seq (2)
ScATAC-seq (2)
MicroRNA profiling by array (2)
RNA-seq of total RNA (2)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
Whole chromosome random sequencing (1)
Trajectory (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2014 (204)
2013 (195)
2010 (193)
2015 (189)
2012 (173)
2011 (138)
2016 (108)
2008 (98)
2009 (96)
2021 (54)
2007 (54)
2023 (45)
2022 (43)
2020 (38)
2018 (35)
2019 (34)
2017 (31)
2025 (30)
2024 (23)
2006 (16)
2005 (13)
2026 (6)
2004 (2)
2000 (1)
1997 (1)

Lab affiliation

Flinders Health and Medical Research Institute, College of Medicine and Public Health, Flinders University, Adelaide, Australia (2)
Laboratory of Biotechnology of Reproduction, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, 46022 Valencia, Spain (2)
AgriBio centre, Department of Economic Development, government of Victoria, Australia (1)
Applied Veterinary Morphology, Department of Veterinary Sciences, University of Antwerp, Belgium (1)
BioArCh, University of York, United Kingdom (1)
Cardiovascular Division, King's College London, London, UK (1)
Cleveland Clinic Lerner Research Institute (1)
Department of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand (1)
Division of Neurobiology The Roslin Institute Royal (Dick) School of Veterinary Studies College of Medicine and Veterinary Medicine University of Edinburgh Easter Bush Midlothian EH25 9RG SCOTLAND, UK t: 44 (0)131 651 9119 e: T.M.Wishart@Roslin.ed.ac.uk website: http://www.roslin.ed.ac.uk/tom-wishart http://www.euanmacdonaldcentre.com/research.html (1)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (1)
Equipe « Interactions Cellulaires et Fertilité » Physiologie de la Reproduction et des Comportements UMR INRA 85-Cnrs 7247-Université de Tours IFCE Centre INRA Val de Loire 37380 NOUZILLY France (1)
Globe Institute, University of Copenhagen, Denmark (1)
INRA-Nouzilly-PRC (1)
Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, 100044, China (1)
Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China. (1)
Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences; College of Earth and Planetary Sciences, University of Chinese Academy of Sciences; Key Research Base on Paleolithic Human Evolution and Paleogenetics (IVPP), SACH (1)
MSAP, UAR 3290, CNRS 59655 villeneuve d'Ascq, France (1)
Max Planck Institute for Dynamics of Complex Technical Systems, Bioprocess Engineering Sandtorstraße 1, 39106 Magdeburg (1)
Metabolomics and Proteomics Core, Helmholtz Zentrum München, German Center for Environmental Health (1)
Museum national d'Histoire naturelle (1)
Muséum national d'Histoire naturelle (1)
National Dairy Research Institute (1)
Office of Chief Medical Examiner of the City of New York (1)
Ph. D, HDR Responsable de l’équipe « Neurobiologie intégrative de la reproduction »- ER2 NIGER UMR 7247 INRA-CNRS-Univ. Tours-IFCE Centre INRA de Tours, PRC F-37380 Nouzilly France (1)
Professor, University of British Columbia (1)
Proteomics and Structural Biology Lab, Animal biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India (1)
Receptor Dynamics in Cancer Laboratory Department of Molecular & Clinical Cancer Medicine Institute of Systems, Molecular & Integrative Biology University of Liverpool UK (1)
School of Medical Science and Technology, Department of Biotechnology, Indian Institute of Technology Kharagur, Kharagpur 721302, India (1)
School of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India (1)
Section for Molecular Ecology and Evolution, Biomolecular Palaeoanthropology Lab, Globe Institute, University of Copenhagen (1)

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