Mandel A A - OmicsDI

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Unknown (781)
Transcriptomics (97)
Proteomics (37)
Genomics (35)
Metabolomics (2)
Multiomics (1)

Organisms

Homo sapiens (107)
Mus musculus (32)
Sus scrofa (4)
Rattus norvegicus (3)
Fusarium sinicum (3)
Arabidopsis thaliana (2)
Coccidioides posadasii (1)
Macaca fascicularis (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Bacteria (1)
Caenorhabditis elegans (1)
Cricetulus griseus (1)
Drosophila melanogaster (1)
Human gammaherpesvirus 8 (1)

Organisms

Mus musculus (3)
Aliivibrio fischeri (2)
Clavibacter nebraskensis (1)
Helianthus annuus (1)

Repository

biostudies-arrayexpress (105)
pride (30)
EGA (19)
ENA (8)
MassIVE (4)
PAXDB (3)
MetaboLights (2)

Tissue

Embryonic stem cell (6)
Cell culture (5)
Hypothalamus cell (2)
Kidney (2)
Cotyledon (1)
Epithelial cell (1)
HEK-293 cell (1)
HFF-1 cell (1)
HeLa cell (1)
Hypocotyl (1)
Leaf (1)
Root (1)
Sciatic nerve (1)
Spinal cord motor neuron (1)

Disease

Disease free (6)
Huntington Disease (2)
Lissencephaly 1 (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (4)
Data-dependent acquisition (3)
Mass spectrometry (2)
Data-independent acquisition (2)
SWATH MS (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
NextSeq 500 (4)
Illumina HiSeq 2500 (3)
Q Exactive (3)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 (2)
10X Genomics Single Cell, V3.1 (1)
Chromium 10X Genomics (1)
BD FACSAria III (1)
None (1)
NA (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)
Orbitrap fusion Lumos Tribrid (1)
5975C Series GC/MSD (Agilent) (1)
6550 Q-TOF LC-MS Agilent (1)

Publication Date

2010 (15)
2023 (13)
2014 (13)
2013 (12)
2012 (12)
2016 (10)
2015 (10)
2019 (8)
2024 (7)
2011 (6)
2026 (5)
2025 (4)
2020 (4)
2017 (4)
2018 (4)
2022 (3)
2021 (3)
2009 (3)
2008 (3)
2007 (3)
2005 (2)

UNIPROT ID/AC

1433B_HUMAN (3)
1433E_HUMAN (3)
1433F_HUMAN (3)
1433G_HUMAN (3)
1433S_HUMAN (3)
1433T_HUMAN (3)
1433Z_HUMAN (3)
2A5A_HUMAN (3)
2A5B_HUMAN (3)
2A5D_HUMAN (3)
2A5E_HUMAN (3)
2A5G_HUMAN (3)
2AAA_HUMAN (3)
2AAB_HUMAN (3)
2ABA_HUMAN (3)
2ABD_HUMAN (3)
3BHS7_HUMAN (3)
3BP1_HUMAN (3)
3HAO_HUMAN (3)
3HIDH_HUMAN (3)
41_HUMAN (3)
4F2_HUMAN (3)
5NT1A_HUMAN (3)
5NT3A_HUMAN (3)
5NT3B_HUMAN (3)
5NTC_HUMAN (3)
5NTD_HUMAN (3)
6PGD_HUMAN (3)
6PGL_HUMAN (3)
8ODP_HUMAN (3)

CHEBI ID

CHEBI:142276 (1)
CHEBI:143032 (1)
CHEBI:143033 (1)
CHEBI:143034 (1)
CHEBI:143035 (1)
CHEBI:143036 (1)
CHEBI:143037 (1)
CHEBI:143038 (1)
CHEBI:143039 (1)
CHEBI:143040 (1)
CHEBI:143041 (1)
CHEBI:143042 (1)
CHEBI:143043 (1)
CHEBI:143044 (1)
CHEBI:143045 (1)
CHEBI:143046 (1)
CHEBI:143047 (1)
CHEBI:143048 (1)
CHEBI:143049 (1)
CHEBI:143050 (1)
CHEBI:143051 (1)
CHEBI:143052 (1)
CHEBI:143053 (1)
CHEBI:143054 (1)
CHEBI:143055 (1)
CHEBI:143056 (1)
CHEBI:143057 (1)
CHEBI:143058 (1)
CHEBI:143059 (1)
CHEBI:143060 (1)

Metabolite Name

(+)-12-methyl myristic acid (1)
(2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal (1)
(2S,4S)-Pinnatanine (1)
(S,E)-Lyratol propanoate (1)
1,2-Di-O-palmitoyl-3-O-(6-sulfoquinovopyranosyl)glycerol (1)
12'-Apo-b-carotene-3,12'-diol (1)
15:0 Cholesteryl ester (1)
17-(7-hydroxy-6-methylhept-5-en-2-yl)-4,4,10,13,14-pentamethyl-1,2,5,6,12,15,16,17-octahydrocyclopenta[a]phenanthren-3-one (1)
2,2,3-Trimethyltridecanoic acid (1)
2,3-dihydroxypropyl icos-11-enoate (1)
2-O-(alpha-D-glucopyranosyl)-D-glycerate (1)
2-[3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,6-dienyl]benzene-1,4-diol (1)
2-palmitoleoyl-glycerol (1)
3-Hydroxy-6,8-dimethoxy-7(11)-eremophilen-12,8-olide (1)
3-Ketoapotrichothecene (1)
3-O-alpha-L-Arabinopyranosylproanthocyanidin A5' (1)
6,7-Dihydro-4-(hydroxymethyl)-2-(p-hydroxyphenethyl)-7-methyl-5H-2-pyrindinium (1)
8-Acetoxy-4-acoren-3-one (1)
Acoric acid (1)
Annuionone B (1)
Apigenin 7-[rhamnosyl-(1->2)-galacturonide] (1)
Artemisinic acid (1)
Azadiradionolide (1)
Barringtogenol C (1)
Caffeic acid (1)
Catechin 7,4'-dimethyl ether (1)
Cyclopassifloside III (1)
D-glucose (1)
Dehydrotomatine (1)
Dehydrovomifoliol (1)

First Public Date

2022 (2)
2014 (2)
2025 (1)
2023 (1)
2020 (1)
2017 (1)

Study type

Transcription profiling by array (58)
RNA-seq of coding RNA (12)
RNA-seq of coding RNA from single cells (9)
ChIP-seq (7)
Unknown experiment type (4)
Methylation profiling by array (4)
Comparative genomic hybridization by array (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
ChIP-chip by tiling array (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (84)
2023 (67)
2025 (64)
2024 (64)
2021 (60)
2015 (57)
2016 (52)
2018 (48)
2020 (47)
2019 (46)
2014 (44)
2013 (37)
2012 (37)
2010 (35)
2017 (31)
2011 (26)
2009 (23)
2008 (17)
2007 (10)
2026 (7)
2005 (6)
2006 (6)
2004 (5)
2002 (3)
1998 (3)
2000 (2)
2003 (1)
2001 (1)
1999 (1)
1997 (1)

Lab affiliation

1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel (4)
The Dr. Irving and Jeanette Benveniste Chair in Life Sciences, Faculty of Biology, Technion-Israel Institute of Technology, Haifa 32000 ISRAEL (3)
University of Cologne, Germany (2)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel. 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel. (1)
1Departments of Biomolecular Sciences and Molecular Neuroscience, Weizmann Institute of Science, 7610001 Rehovot, Israel (1)
Associate Professor Glyco MS Group Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine (24.6.36) University of Copenahgen Blegdamsvej 3 2200 Copenhagen N Denmark (1)
Associate Professor Glyco MS Group Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine University of Copenahgen Blegdamsvej 3 2200 Copenhagen N Denmark (1)
CECAD Forschungszentrum, Joseph-Stelzmann-Str. 26, 50931 Köln (1)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Copenhagen Center for Glycomics (CCG), Glyco-MS Group Department of Cellular and Molecular Medicine University of Copenhagen (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne and University Hospital Cologne, Cologne, Germany (1)
Department of Biomolecular Sciences. Weizmann Institute of Science. Rehovot, Israel (1)
Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Molecular Systems Biology, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany (1)
Departments of Molecular Genetics and Molecular Neuroscience (1)
ETH Zürich Institute of Molecular Systems Biology Otto-Stern-Weg 3 8093 Zürich Switzerland (1)
Faculty of Biology, Technion – Israel Institute of Technology (1)
Forschungszentrum Juelich ZEA-3 Analytics (1)
Institut für Molekularbiologie und Tumorforschung (IMT) Biomedizinisches Forschungszentrum Philipps-Universität Marburg Hans-Meerwein-Straße 2 35043 Marburg (Germany) Phone: +49-(0)6421-28-66840 (1)
University Hospital Cologne (1)
University of Cologne Germany (1)
Vollum Inst., OHSU (1)

Tags

xref:PubMed:25250711 (2)
xref:PubMed:37919281 (1)
xref:PubMed:38126773 (1)
xref:PubMed:37609283 (1)
xref:EuropePMC:PMC6147562 (1)

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Attosecond-resolution Hong-Ou-Mandel interferometry.

Not available

S-EPMC5935478 | biostudies-literature

Paule-Mandel estimators for network meta-analysis with random inconsistency effects.

Not available

S-EPMC5720360 | biostudies-literature

The proximity-labeling technique BioID identifies sorting nexin 6 as a member of the insulin-like growth factor 1 (IGF1)-IGF1 receptor pathway.

Not available

S-EPMC5925803 | biostudies-literature

Two-parameter Hong-Ou-Mandel dip.

Not available

S-EPMC6658540 | biostudies-literature

Interactome analysis of longitudinal pharyngeal infection of cynomolgus macaques by group A Streptococcus

Relatively little is understood about the dynamics of global hostâ€“pathogen transcriptome changes that occur during bacterial infection of mucosal surfaces. To test the hypothesis that group A Streptococcus (GAS) infection of the oropharynx provokes a host transcriptome response, we performed genom...

ORGANISM(S): Macaca fascicularis

2010-03-18 | E-GEOD-20262 | biostudies-arrayexpress

Electronic Hong Ou Mandel interferences to unveil the 2/3 fractional quantum Hall edge channel dynamics.

Not available

S-EPMC12475081 | biostudies-literature

Investigating the efficacy and safety of calcipotriol/betamethasone dipropionate foam and laser microporation for psoriatic nail disease-A hybrid trial using a smartphone application, optical coherence tomography, and patient-reported outcome measures.

Not available

S-EPMC10078349 | biostudies-literature

Loss-tolerant state engineering for quantum-enhanced metrology via the reverse Hong-Ou-Mandel effect.

Not available

S-EPMC4919515 | biostudies-literature

Polycomb Repressor Complex 2 and REST-associated histone deacetylases are independent pathways toward a mature neuronal phenotype.

These experiments were designed to test the hypothesis that REST and Polycomb Repressor Complex 2 function cooperatively in undifferentiated ESCs. Our results showed that a majority of REST-bound genomic regions were not associated with H3K27me3 enrichment and loss of H3K27me3 enrichment was not a g...

ORGANISM(S): Mus musculus

2014-09-30 | E-GEOD-48320 | biostudies-arrayexpress

Skeletal muscle differentiation induces wide-ranging nucleosome repositioning in muscle gene promoters.

Not available

S-EPMC11043329 | biostudies-literature

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