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UnknownTandem Mass Spectrometry-Based Amyloid Typing Using Manual Microdissection and Open-Source Data Processing.
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S-EPMC9071319 | biostudies-literature
TranscriptomicsRNA-seq of surgically removed chemo-naive pancreatic adenocarcinoma
RNA was extracted from FFPE samples by manual microdissection of the tumor zones. RNAseq libraries were perfomed using Lexogen's QuantSeq (reverse) 3' kit
ORGANISM(S): Homo sapiens 
2023-05-21 | E-MTAB-13007 | biostudies-arrayexpress
TranscriptomicsComplete embryonic E11.5 metanephric kidney analysis of wild type and Hoxa11, Hoxd11 null targeted mice
E11.5 metanephric mesenchyme and ureteric bud were dissected from the E11.5 kidney rudiment using fine manual microdissection (ureteric bud only) or both fine manual microdissection and laser capture microdissection (metanephric mesenchyme) to define the gene expression profiles of these structures....
ORGANISM(S): Mus musculus 
2006-05-01 | GSE3822 | GEO
TranscriptomicsArray comparative genomic hybridization (aCGH) study of formalin-fixed paraffin-embedded (FFPE) small gastrointestinal stromal tumors (GISTs) less than 1 cm in greatest diameter (microGISTs)
To investigate the cytogenetic and large-scale chromosomal changes in involuted or non-involuted microGISTs using post-whole genome amplification (WGA) FFPE DNA materials Sixteen patients, total 19 FFPE tumor samples (block storage time 4 months to 9 years), including 16 microGISTs and 3 GISTs large...
ORGANISM(S): Homo sapiens 
2011-12-31 | E-GEOD-28469 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of wild type and HoxA11 metenephric mesenchyme and ureteric bud from embryonic day 11.5 mice
E11.5 metanephric mesenchyme and ureteric bud were dissected from the E11.5 kidney rudiment using fine manual microdissection (ureteric bud only) or both fine manual microdissection and laser capture microdissection (metanephric mesenchyme) to define the gene expression profiles of these structures....
ORGANISM(S): Mus musculus 
2007-12-07 | E-GEOD-3822 | biostudies-arrayexpress
TranscriptomicsFertilization-induced synergid cell death by RALF12-triggered ROS production and ethylene signaling
Plant material from synergid cells before pollination, and persistent synergid cells 12, 18, and 24 hours after pollination (hap) was collected using manual microdissection. Cell- and stage-specific RNA-seq data were generated with these cell samples to (i) investigate molecular mechanisms ensuring ...
ORGANISM(S): Zea mays 
2025-02-27 | GSE283809 | GEO
TranscriptomicsTranscription profiling of mouse laser dissected hippocampus of Rasgrf1 knockout mice
We used manual macrodissection or laser capture microdissection (LCM) to isolate tissue sections of the hippocampus area of Ras-GRF1 wild type and knockout mice brains, and analyzed their transcriptional patterns using commercial oligonucleotide microarrays. Comparison between the transcriptomes of ...
ORGANISM(S): Mus musculus 
2008-06-16 | E-GEOD-8425 | biostudies-arrayexpress
TranscriptomicsTranscriptomic profiling of S2/S3 proximal tubules in response to LPS treatment
To investigate the mechanisms of endotoxin-mediated kidney injury as well as renoprotective effects of endotoxin preconditioning, we performed manual microdissection of S2/S3 proximal tubules in mice as follows: 1) Non-preconditioned mice subjected to single-dose 5 mg/kg LPS (0111:B4) i.p. for 4 hrs...
ORGANISM(S): Mus musculus 
2018-10-06 | GSE120879 | GEO
TranscriptomicsExpression data of freshly microdissected human hair follicle dermal papilla and its comparisons
The dermal papilla (DP) of the hair follicle plays crucial roles in the hair follcie morphogenesis and cycling. Thus, the elucication of human DP molecular signature is of great interest. DP cell culture by conventional method impairs intrinsic properties of DP cells. Isolatoion of human DP is hampe...
ORGANISM(S): Homo sapiens 
2011-08-11 | GSE31324 | GEO
TranscriptomicsMicroRNA expression data from human renal cell cancer subtypes
MicroRNAs play a vital role in the process of tumorigenesis. To identify and characterize miRNA Expression in renal cell cancer, we performed microarray based screening of miRNA expression profiles in clear cell, papillary type 1 and papillary type 2 renal cell cancer. We selected cases of confirmed...
ORGANISM(S): Homo sapiens 
2012-10-03 | E-GEOD-41282 | biostudies-arrayexpress
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