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TranscriptomicsIdentification of microarray probe signals constantly present in multiple sample types (part 2)
The correlation of the RNA profiles obtained by microarray analysis was compared with that obtained from RNA-Seq by using reduced complexity sperm datasets. This resolved as a series of discordant probes. The extent of discordancy among other datasets was then determined. A correlative study between...
ORGANISM(S): Homo sapiens 
2013-06-10 | E-GEOD-39527 | biostudies-arrayexpress
TranscriptomicsIdentification of microarray probe signals constantly present in multiple sample types (part 1)
The correlation of the RNA profiles obtained by microarray analysis was compared with that obtained from RNA-Seq by using reduced complexity sperm datasets. This resolved as a series of discordant probes. The extent of discordancy among other datasets was then determined. A correlative study between...
ORGANISM(S): Homo sapiens 
2013-06-10 | E-GEOD-39526 | biostudies-arrayexpress
TranscriptomicsEvaluation of RNA amplification and RNA-Seq library preparation protocols for spermatozoa RNA profiling
RNA-Seq technique was applied to investigate the effects of four cDNA amplification kits and two RNA-Seq library preparation kits to the deep sequencing results at different perspectives. The same set of semen samples were applied to investigate the qualitative and quantitative effect of four cDNA a...
ORGANISM(S): Homo sapiens 
2015-05-09 | E-GEOD-57503 | biostudies-arrayexpress
TranscriptomicsDEEP SEQUENCING OF MODELS OF BREAST DUCTAL CARCINOMA IN SITU REVEALS ALDH5A1 AS A NOVEL POTENTIAL THERAPEUTIC TARGET
We attempted to identify alterations in gene expression that occur during the progression from normal breast to ductal carcinoma in situ (DCIS) with the aim to elucidate significant genes and pathways underlying the premalignant transformation. To determine the expression changes that are common to...
ORGANISM(S): Homo sapiens 
2012-03-28 | E-GEOD-36863 | biostudies-arrayexpress
TranscriptomicsGenomic anchors across the MHC of MRC5 cells upon treatment with IFN-gamma: Loop associated DNA vs Matrix associated DNA
Identification of genomic anchors across the MHC in untreated MRC5 fibroblasts, and fibroblasts treated with IFN-gamma, using high resolution microarrays. Identification of genomic anchors using MRC5 fibroblasts, and fibroblasts treated with IFN-gamma: Loop associated DNA vs Matrix associated DNA, 2...
ORGANISM(S): Homo sapiens 
2012-02-16 | E-GEOD-35845 | biostudies-arrayexpress
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