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TranscriptomicsTranscription profiling of yeast under conditions of ammonium, L-alanine or L-glutamine limitation
Response of Saccharomyces cerevisiae to Ammonium, L-alanine, or L-glutamine Limitation. The protrotophic laboratory strain CEN.PK113-7D (MAT a) was grown in laboratory fermentors with a working volume of 1 litre at dilution rate (D) of 0.20 per hour (in triplicate for each nitrogen limited condition...
ORGANISM(S): Saccharomyces cerevisiae 
2006-06-13 | E-MEXP-724 | biostudies-arrayexpress
TranscriptomicsExpression study of the Hodgkin’s lymphoma cell line L-1236 upon CRISPR Cas9-mediated knockout of lymphotoxin alpha (LTA) compared to control
Persistent activation of canonical and non-canonical NF-κB pathways is a hallmark of the malignant Hodgkin and Reed-Sternberg cells in classical Hodgkin lymphoma (cHL). We identified lymphotoxin alpha (LTA), which is secreted by the cHL cell line L-1236 in high concentrations. This cytokine contribu...
ORGANISM(S): Homo sapiens 
2019-01-24 | E-MTAB-6896 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Drosophila infected with the parasitoid wasps Leptopilina boulardi and L. heterotoma to investigate infection strategies
Although host-parasitoid interactions are becoming well characterized at the organismal and cellular levels, much remains to be understood of the molecular bases for the host immune response and the parasitoids’ ability to defeat this immune response. Leptopilina boulardi and L. heterotoma, two c...
ORGANISM(S): Drosophila melanogaster 
2008-03-13 | E-GEOD-8938 | biostudies-arrayexpress
Transcriptomics17b-Trenbolone study
We investigated the genomic transcriptional response of female fathead minnows (Pimephales promelas) to an acute (4 day) exposure to 0.1 or 1.0 µg/L of, 17β-trenbolone (TB), the active metabolite of an anabolic androgenic steroid used as a growth promoter in cattle and a contaminant of concern in ...
ORGANISM(S): Pimephales promelas 
2010-05-14 | E-GEOD-12904 | biostudies-arrayexpress
TranscriptomicsGlobal Transcriptional Analysis of Spontaneous Sakacin P-Resistant Mutant Strains of Listeria monocytogenes during Growth on Different Sugars
Subclass IIa bacteriocins have strong antilisterial activity and can control the growth of Listeria monocytogenes in food. However, L. monocytogenes may develop resistance towards such bacteriocins. In this follow-up study, the transcriptomes of a high level (L502-1) and a low level (L502-6) spontan...
ORGANISM(S): Listeria monocytogenes 
2011-04-15 | E-BUGS-110 | biostudies-arrayexpress
ProteomicsInsights into the influence of culture systems on maximum root length of rice (Oryza sativa L.) through phosphoproteomics analysis
To investigate the root system, three indoor cultivation systems, including water agar, deep water, and vermiculite-based hydroponics, are commonly used. However, their effects on the root development of rice (Oryza sativa L.) remain unknown. In this study, we assessed the effect of these indoor cul...
ORGANISM(S): Cellular Organisms 
2024-09-28 | PXD050876 | JPOST Repository
TranscriptomicsMulti-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates
Background Lactococcus lactis is recognised as a safe (GRAS) microorganism and has hence gained interest in numerous biotechnological approaches. As it is fastidious for several amino acids, optimization of processes which involve this organism requires a thorough understanding of its metabolic reg...
ORGANISM(S): Lactococcus lactis subsp. lactis Il1403 
2011-01-11 | E-GEOD-26536 | biostudies-arrayexpress
TranscriptomicsListeria monocytogenes Grown at Refrigeration Temperature Shows Reduced Acid Survival and an Altered Transcriptional Response to Acid Shock
Survival of the foodborne pathogen Listeria monocytogenes in acidic environments (e.g., stomach and low pH foods) is vital to its transmission. L. monocytogenes grows at temperatures as low as 2M-BM-0C, and refrigerated, ready-to-eat foods have been sources of L. monocytogenes outbreaks. The purpose...
ORGANISM(S): Listeria monocytogenes 
2011-06-30 | E-GEOD-22672 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis plants grown under diurnal or circadian conditions
Transcript profiling was performed on samples derived from plants grown under long day conditions. Time series were harvested under diurnal (L/D; light/dark cycles) at control temperature (20 C) and cold (4 C); and under circadian conditions (L/L; continuous light) at control temperature (20 C). Lea...
ORGANISM(S): Arabidopsis thaliana 
2010-12-20 | E-MEXP-2526 | biostudies-arrayexpress
ProteomicsD. vulgaris WT & DsrC mutants -- respiration & fermentation
diDO-IPTL proteomics data of Desulfovibrio vulgaris Hildenborough wild type and two DsrC point mutants (IPFG07 & IPFG09) under sulfate-reducing (respiration) and fermentative growth (late-exponential phase)
ORGANISM(S): Desulfovibrio Vulgaris Str. Hildenborough (ncbitaxon:882) 
2022-10-27 | MSV000090596 | MassIVE
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