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TranscriptomicsRNA-seq from ENCODE/Caltech (Mouse)
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Georgi K. Marinov mailto:georgi@caltech.edu (data coordination/informatics/experimental), Diane Trout mailto:diane@caltech.edu (informatics) Brian Williams mailto:bawilli_91125@yahoo....
ORGANISM(S): Mus musculus 
2012-05-10 | GSE37909 | GEO
GenomicsTranscription Factor Binding Sites by ChIP-seq from ENCODE/Caltech
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Barbara Wold mailto:woldb@caltech.edu, Georgi K. Marinov mailto:georgi@caltech.edu, Diane Trout mailto:diane@caltech.edu). If you have questions about the Genome Browser track associa...
ORGANISM(S): Mus musculus 
2012-04-13 | E-GEOD-36024 | biostudies-arrayexpress
UnknownMycobacterium bovis and M. caprae in Bulgaria: insight into transmission and phylogeography gained through whole-genome sequencing.
Not available
S-EPMC9034630 | biostudies-literature
TranscriptomicsRNA-seq from ENCODE/Caltech
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (mailto:georgi@caltech.edu for data coordination/informatics/experimental questions, mailto:diane@caltech.edu for informatics questions, mailto:bawilli_91125@yahoo.com for experimental...
ORGANISM(S): Homo sapiens 
2012-07-12 | E-GEOD-33480 | biostudies-arrayexpress
TranscriptomicsA trans-generational epigenetic process defines piRNA biogenesis in Drosophila virilis
Piwi interacting (pi)RNAs repress diverse transposable elements in the germ cells of metazoans and are essential for fertility in both invertebrates and vertebrates. The precursors of piRNAs are transcribed from distinct genomic regions, the so-called piRNA clusters; however, how piRNA clusters are ...
ORGANISM(S): Drosophila virilis 
2014-09-01 | E-GEOD-59965 | biostudies-arrayexpress
TranscriptomicsPiwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state
In the Metazoan germline, piwi proteins and associated piwi-interacting RNAs (piRNAs) provide a defense system against the expression of transposable elements. In the cytoplasm, piRNA sequences guide piwi complexes to destroy complementary transposon transcripts by endonucleolytic cleavage. However,...
ORGANISM(S): Drosophila melanogaster 
2013-02-11 | E-GEOD-43829 | biostudies-arrayexpress
TranscriptomicsRNA-seq from ENCODE/Caltech (Mouse)
RNA-seq is a method for mapping and quantifying the transcriptome of any organism that has a genomic DNA sequence assembly (Mortazavi et al., 2008). RNA-seq is performed by reverse-transcribing an RNA sample into cDNA, followed by high-throughput DNA sequencing, which was done here on the Illumina H...
ORGANISM(S): Mus musculus 
2012-05-09 | E-GEOD-37909 | biostudies-arrayexpress
TranscriptomicsThe microRNA-212/132 cluster regulates B cell development and apoptosis by targeting SOX4
MicroRNAs have emerged as key regulators of B cell fate decisions and immune function. Deregulation of several microRNAs in B cells leads to the development of autoimmune disease and cancer in mice. We demonstrate that the microRNA-212/132 cluster (miR-212/132) is induced in B cells in response to B...
ORGANISM(S): Mus musculus 
2015-09-01 | E-GEOD-66882 | biostudies-arrayexpress
GenomicsHistone Modifications by ChIP-seq from ENCODE/Caltech
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Barbara Wold mailto:woldb@caltech.edu, Georgi K. Marinov mailto:georgi@caltech.edu, Diane Trout mailto:diane@caltech.edu). If you have questions about the Genome Browser track associa...
ORGANISM(S): Mus musculus 
2012-04-19 | E-GEOD-36023 | biostudies-arrayexpress
TranscriptomicsMIWI2 and MILI have differential effects on piRNA biogenesis and DNA methylation
In developing male germ cells, prospermatogonia, two Piwi proteins, MILI and MIWI2, use piRNA guides to repress transposable element (TE) expression and ensure genome stability and proper gametogenesis. In addition to their roles in post-transcriptional TE repression, both proteins are required for ...
ORGANISM(S): Mus musculus 
2015-07-11 | E-GEOD-70731 | biostudies-arrayexpress
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