Martinez A A - OmicsDI

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Unknown (31146)
Transcriptomics (415)
Proteomics (387)
Genomics (107)
Metabolomics (26)
Models (18)
Genomic (5)
Other (1)

Organisms

Homo sapiens (236)
Mus musculus (98)
Arabidopsis thaliana (21)
Saccharomyces cerevisiae (13)
Rattus norvegicus (11)
Heterocephalus glaber (8)
Sus scrofa (6)
Drosophila melanogaster (4)
Medicago truncatula (3)
Triticum aestivum (3)
Vertebrata (2)
Bathyergus suillus (2)
Citrus limonia (2)
Amphiura filiformis (2)
Hordeum vulgare (2)
Hordeum vulgare subsp. vulgare (2)
Solanum lycopersicum (2)
Danio rerio (2)
Rhinolophus ferrumequinum (1)
Steinernema carpocapsae (1)
Methyloversatilis universalis FAM5 (1)
Citrus jambhiri (1)
Haloferax mediterranei (1)
Citrus medica (1)
Gorilla gorilla gorilla (1)
Scophthalmus maximus (1)
Mycobacterium leprae (1)
Lactococcus lactis subsp. lactis (1)
Lactococcus lactis (1)
Chlamydia trachomatis (1)

Organisms

Mus musculus (9)
Arabidopsis thaliana (8)
Homo sapiens (7)
Xylella fastidiosa subsp. fastidiosa (5)
Xylella fastidiosa subsp. multiplex (4)
Rhizobium sp. Pop5 (2)
Citrus limonia (2)
Methylorubrum extorquens AM1 (2)
Saccharomyces cerevisiae (2)
Rhizobium grahamii CCGE 502 (1)
Rhizobium sp. CCGE 510 (1)
Human mastadenovirus A (1)
Clamator glandarius (1)
Rhizobium endophyticum CCGE 2052 (1)
Rhizobium mesoamericanum CCGE 501 (1)
Boana pugnax (1)
Xylella fastidiosa subsp. sandyi (1)
Escherichia coli A-03_34 (1)
Cuscuta campestris (1)
Cucumis sativus (1)

Repository

biostudies-arrayexpress (443)
pride (370)
ENA (66)
MetaboLights (26)
BioModels (16)
MassIVE (13)
EGA (12)
dbGaP (5)
geo (3)
Cell Collective (2)
GPMDB (1)
iProX (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (65)
Epithelial cell (30)
Brain (20)
Liver (18)
Blood (13)
Fibroblast (11)
Blood plasma (8)
Cell line cell (7)
Heart (7)
Lung (7)
Plant cell (7)
Stem cell (7)
T cell (7)
Kidney (6)
Cell suspension culture (5)
HeLa cell (5)
Macrophage (5)
Primary cell (5)
Early embryonic cell (4)
HEK-293 cell (4)
Pancreas (4)
Permanent cell line cell (4)
Blood cell (3)
Bone marrow (3)
Cholangiocyte (3)
Embryonic stem cell (3)
Feces (3)
Hepatocyte (3)
T-47D cell (3)
UWB1.289 cell (3)

Disease

Colon cancer (14)
COVID-19 (8)
Parkinson's disease (8)
Neuroblastoma (6)
Acute leukemia (5)
Normal (4)
Breast cancer (4)
Disease free (3)
Malaria (3)
Polycystic liver disease (3)
Lymphoid leukemia (2)
Alzheimer's disease (2)
Amyotrophic lateral sclerosis (2)
Atherosclerosis (2)
Brain glioblastoma multiforme (2)
Cardiovascular system disease (2)
Cervix carcinoma (2)
Cholangiocarcinoma (2)
Colorectal cancer (2)
Huntington Disease (2)
Infertility (2)
Male infertility (2)
Myocardial ischemia (2)
Unspecified peripheral T-cell lymphoma (1)
Spindle cell tumor (1)
Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
None (1)
No tendon xanthomas (1)
Sb tumours (1)
Not Available (1)

Technology Type

Mass Spectrometry (370)
Shotgun proteomics (183)
Bottom-up proteomics (73)
Affinity purification coupled with mass spectrometry proteomics (54)
Data-dependent acquisition (29)
Data-independent acquisition (25)
SWATH MS (25)
Gel-based experiment (21)
Mass spectrometry (18)
Top-down proteomics (15)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
NMR spectroscopy (6)
All-ion fragmentation (6)
Mass spectrometry assay (4)
SRM/MRM (4)
DiaPASEF (3)
HDMSE (2)
MSE (2)
Mass spectrometry imaging (2)
Applied Biosystems 3100 automated sequencer-GeneMarker v.1.6 (Softgenetics) (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
SomaScan affinity proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (23)
Illumina HiSeq 2500 (11)
Illumina HiSeq 2000 (9)
Illumina HiSeq 4000 (8)
NextSeq 500 (5)
Q Exactive (4)
PromethION (3)
Illumina MiSeq (3)
LTQ Orbitrap Velos (3)
Pacbio Revio (2)
Illumina NovaSeq X (2)
Ion Torrent Proton (2)
NextSeq 2000 (2)
Orbitrap Fusion (2)
Orbitrap Fusion Lumos (2)
Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 (1)
Thermo Fisher (1)
Python 3.10.12 environment (1)
NextSeq500 (1)
C1 Single-Cell Auto Prep System, Fluidigm (1)
MoFlo XPD (Beckman Coulter, Fullerton, CA, USA) flow cytometer (1)
Agilent DNA Microarray Scanner G2565CA (1)
Illumina MouseWG-6 v2 Expression BeadChip (1)
Axon- GenePix4000B (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
None (1)
Agilent NGS Workstation (1)
NextSeq 550 (1)
Instrument (1)

Publication Date

2025 (79)
2026 (72)
2012 (67)
2022 (61)
2024 (59)
2014 (58)
2023 (50)
2015 (47)
2019 (47)
2013 (45)
2021 (44)
2010 (44)
2011 (41)
2016 (38)
2020 (30)
2018 (25)
2009 (17)
2017 (16)
2008 (12)
2007 (7)
2006 (4)
2005 (2)
2004 (1)

UNIPROT ID/AC

Q7KYZ4 (1)
1433A_TOBAC (1)
1433B_TOBAC (1)
1433C_TOBAC (1)
1433D_TOBAC (1)
1433E_TOBAC (1)
1433F_TOBAC (1)
1433_TOBAC (1)
4CL1_TOBAC (1)
4CL2_TOBAC (1)
A0A024AXE8_TOBAC (1)
A0A059TCI1_TOBAC (1)
A0A059TCI3_TOBAC (1)
A0A067ZTA7_TOBAC (1)
A0A068JFR6_TOBAC (1)
A0A068LMB8_TOBAC (1)
A0A075EYP9_TOBAC (1)
A0A075EYQ1_TOBAC (1)
A0A075EYQ4_TOBAC (1)
A0A075EYQ6_TOBAC (1)
A0A075F1U0_TOBAC (1)
A0A075F1U5_TOBAC (1)
A0A075F1V2_TOBAC (1)
A0A075F2H1_TOBAC (1)
A0A075F2H4_TOBAC (1)
A0A075F933_TOBAC (1)
A0A075F9G5_TOBAC (1)
A0A075QPA9_TOBAC (1)
A0A076FNG8_TOBAC (1)
A0A076FNH2_TOBAC (1)

CHEBI ID

CHEBI:30769 (14)
CHEBI:32816 (11)
CHEBI:26271 (9)
CHEBI:27266 (9)
CHEBI:6650 (9)
CHEBI:15428 (9)
CHEBI:18012 (9)
CHEBI:27897 (9)
CHEBI:18186 (8)
CHEBI:28300 (8)
CHEBI:28044 (8)
CHEBI:17234 (7)
CHEBI:24898 (7)
CHEBI:25017 (7)
CHEBI:17754 (7)
CHEBI:15366 (7)
CHEBI:25094 (7)
CHEBI:33508 (7)
CHEBI:16199 (7)
CHEBI:17992 (6)
CHEBI:17822 (6)
CHEBI:22660 (6)
CHEBI:16811 (6)
CHEBI:15676 (6)
CHEBI:15963 (6)
CHEBI:35932 (6)
CHEBI:16704 (6)
CHEBI:16857 (6)
CHEBI:30887 (6)
CHEBI:35195 (1)

Metabolite Name

Pyruvic acid (7)
Citric acid (7)
Glycine (6)
Mannitol (6)
Urea (6)
L-Phenylalanine (6)
Valine (5)
Betaine (5)
L-Histidine (5)
D-Glucose (5)
Phenylalanine (5)
L-Glutamine (5)
Glucose (5)
Creatine (5)
L-Valine (5)
L-Leucine (5)
L-Tyrosine (5)
D-Galactose (4)
Leucine (4)
Xanthosine (4)
Uridine (4)
Allantoin (4)
L-Lactic acid (4)
Glycerol (4)
L-Alanine (4)
Beta-alanine (4)
L-Threonine (4)
Choline (4)
Pantothenic acid (4)
Succinic acid (4)

First Public Date

2022 (8)
2025 (7)
2017 (7)
2014 (7)
2026 (6)
2013 (6)
2016 (5)
2021 (4)
2019 (4)
2024 (3)
2023 (3)
2018 (3)
2020 (2)
2015 (1)

Modelling Approach

Ordinary differential equation model (9)
Logical model (7)

Lab affiliation

Cellzome (7)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
Microbial Evolution Laboratory, Centro de Astrobiologia (CSIC-INTA), 28850 Torrejón de Ardoz, Madrid, Spain (7)
Fernando Garcia Martinez Ph.D. Proteomics & MS Specialist Proteomics Unit, Spanish National Cancer Research Centre (CNIO) Melchor Fernández Almagro 3. E28029 MADRID, SPAIN. Phone +34 912246900 ext 3112 (4)
Quantitative Proteomics Proteome Center Tübingen Universität Tübingen Auf der Morgenstelle 15 72076 Tübingen (4)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (3)
Department of Medicine and Animal Surgery, Faculty of Veterinary Science, University of Murcia, Spain (3)
Systems Biology Ireland, University College Dublin (3)
Vice Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program University of Copenhagen Faculty of Health and Medical Sciences Blegdamsvej 3b DK-2200 Copenhagen Denmark (3)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Associate Professor Magnetic Resonance Mass Spectrometry Perth, Western Australia, Australia (2)
CNIO (2)
Chromatin Biology Laboratory, Cancer Epigenetics and Biology Program (PEBC), Bellvitge Biomedical Research Institute (IDIBELL), L’Hospitalet de Llobregat, Barcelona, Spain. Chromatin Biology Laboratory, Josep Carreras Leukaemia Research Institute (IJC), Badalona, Spain. (2)
Departament de Bioquímica i Biologia Molecular Universitat de Valencia (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, CH-1211 Switzerland (2)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (2)
Max Perutz Labs, Medical University of Vienna, Dr. Bohr-Gasse 9/2, 1030 Vienna, Austria (2)
National Autonomous University of Mexico. Mexico City (2)
National Center for Biotechnology (CNB-CSIC), Department of Macromolecular Structures) (2)
Professor, Department of Cellular and Molecular Pharmacology (2)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (2)
Senior Director, Dynamic Omics, CGR, One Medimmune Way Gaithersburg, MD 20878 (2)
Technology and development department, Centro de Referencia para Lactobacillus (CERELA-CONICET), San Miguel de Tucumán, Tucumán, Argentina (2)
Translational Genomics Research Institute (2)
University of Liverpool (2)
Washington State University (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2 Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)

IsPrivate

False (16)

Model Flag

Non Kinetic (5)

Submitter Keywords

Immuno-oncology (2)

Classification

viruses (1)
bacteria (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
-17.026549 (1)
-18.010565 (1)
0.984016 (1)
15.994915 (1)
4 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (263)
RNA-seq of coding RNA (54)
Comparative genomic hybridization by array (22)
ChIP-seq (20)
RNA-seq of coding RNA from single cells (13)
Unknown experiment type (11)
Methylation profiling by array (7)
RNA-seq of non coding RNA (7)
DNA-seq (6)
ChIP-chip by tiling array (3)
Genotyping by array (3)
Other (3)
Methylation profiling by high throughput sequencing (3)
High-throughput sequencing (2)
CLIP-seq (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
ATAC-seq (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
RNA-seq of total RNA (2)
Cell line - Single-cell sequencing (1)
Baseline (1)
Differential (1)
RIP-chip by array (1)
Human - Methylation microarray (1)
Plant - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)

Release Date

2022 (3860)
2023 (3660)
2025 (3572)
2021 (3557)
2024 (3207)
2020 (2580)
2019 (1967)
2018 (1604)
2017 (1272)
2016 (1127)
2015 (1045)
2014 (874)
2013 (590)
2026 (571)
2012 (563)
2011 (405)
2010 (313)
2009 (217)
2008 (181)
2007 (116)
2006 (81)
2005 (56)
2004 (45)
2003 (39)
2002 (22)
2000 (19)
1999 (15)
1998 (14)
2001 (10)
1997 (2)

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Fecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial

Fecal microbiota transplantation (FMT) represents a potential strategy to overcome resistance to immune checkpoint inhibitors in patients with refractory melanoma; however, the role of FMT in first-line treatment settings has not been evaluated. We conducted a multicenter phase I trial combining ...

2025-02-27 | MTBLS711 | MetaboLights

Chemotherapy Modulation by a Cancer-Associated Microbiota Metabolite (Targeted metabolomics - 2methylisocitrate)

Understanding how the microbiota produces regulatory metabolites is of significance for cancer and cancer therapy. Using a host-microbe-drug-nutrient 4-way screening approach, we evaluated the role of nutrition at the molecular level in the context of 5-fluorouracil toxicity. Notably, our screens...

2025-09-16 | MTBLS9994 | MetaboLights

Chemotherapy Modulation by a Cancer-Associated Microbiota Metabolite (Targeted metabolomics - fluoronucleotides)

2025-09-16 | MTBLS9991 | MetaboLights

Escherichia coli A-03_34

Escherichia coli A-03_34 Genome sequencing

PRJNA192706 | ENA

Dynamic utilization of low-molecular-weight organic substrates across a microbial growth rate gradient

AIM: Low-molecular-weight organic substances (LMWOSs) are at the nexus between micro-organisms, plant roots, detritus and the soil mineral matrix. The nominal oxidation state of carbon (NOSC) has been suggested as a potential parameter for modelling microbial uptake rates of LMWO...

2023-08-14 | MTBLS3558 | MetaboLights

Martinez-Guimera2017 - Generic negative feedforward circuit (Model 5)

Martinez-Guimera2017 - Generic negative feedforward circuit (Model 5) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A, Shanley DP. Mech. Ageing De...

MODEL1710260004 | BioModels

Martinez-Guimera2017 - Generic negative feedback circuit (Model 4)

Martinez-Guimera2017 - Generic negative feedback circuit (Model 4) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A, Shanley DP. Mech. Ageing Dev. ...

MODEL1710260003 | BioModels

Martinez-Guimera2017 - Generic redox signalling model without negative regulation (Model 1)

Martinez-Guimera2017 - Generic redox signalling model without negative regulation (Model 1) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A, Shanley...

MODEL1710260000 | BioModels

Martinez-Guimera2017 - Generic redox signalling model with negative feedforward regulation (Model 3)

Martinez-Guimera2017 - Generic redox signalling model with negative feedforward regulation (Model 3) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A...

MODEL1710260002 | BioModels

Martinez-Guimera2017 - Generic redox signalling model with negative feedback regulation (Model 2)

Martinez-Guimera2017 - Generic redox signalling model with negative feedback regulation (Model 2) This model is described in the article: 'Molecular habituation' as a potential mechanism of gradual homeostatic loss with age. Martinez Guimera A, Welsh CM, Proctor CJ, McArdle A, S...

MODEL1710260001 | BioModels

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