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TranscriptomicsHi-C data of Solanum lycopersicum plants bearing the sulfurea epiallele versus plants bearing WT epiallele
The aim of this experiment was to detect possible chromatin organisation differences between sulfurea and WT plants.
ORGANISM(S): Solanum lycopersicum 
2021-06-27 | E-MTAB-10574 | biostudies-arrayexpress
TranscriptomicssmallRNA-seq of Solanum lycopersicum cv M82 WT versus Solanum lycopersicum cv Lukullus bearing the sulfurea epiallele
3 sRNA-seq bioreps of WT and sulfurea samples. The aim of this experiment was to compare sRNA abundance at between the two genotypes with particular interest on SlTAB2 (Solyc02g005200) which has been previously associated with paramutation in the sulfurea background.
ORGANISM(S): Solanum lycopersicum 
2021-06-21 | E-MTAB-10556 | biostudies-arrayexpress
TranscriptomicssmallRNA-seq of Solanum lycopersicum segregating for the sulfurea epiallele in cmt3 versus WT
Plants bearing a sulfurea epiallele (TAB2sulf) were crossed with cmt3 mutants in Solanum Lycopersicum. 6 plants of a F2 progeny segregating both for TAB2sulf and cmt3 mutation were sequenced. 4 plants bear the cmt3 mutation and 2 plants have CMT3 WT alleles. the aim of the experiment was to compare ...
ORGANISM(S): Solanum lycopersicum 
2021-06-21 | E-MTAB-10557 | biostudies-arrayexpress
TranscriptomicsBisulfite-seq of the Solanum lycopersicum sulfurea paramutation in the cmt3 mutant background and upon reintroduction of WT CMT3
Whole genome bisulfite sequencing was done in F3 plants resulting from a cross between Solanum lycopersicum plants bearing the sulfurea epiallele and cmt3 mutants. 6 F3 plants were sequenced: 3 WT and 3 cmt3. The F3 WT plants had methylation levels (quantified with McrBC-qPCR) consistent with the TA...
ORGANISM(S): Solanum lycopersicum 
2021-06-24 | E-MTAB-10568 | biostudies-arrayexpress
TranscriptomicssmallRNA-seq of Solanum lycopersicum bearing the sulfurea epiallele in nrpe1 versus WT
Plants bearing a sulfurea epiallele (TAB2sulf) were crossed with nrpe1 (largest polV subunit) mutants in Solanum Lycopersicum. 7 plants of a F3 progeny expected to be 100% TAB2sulf and segregating for the nrpe1 mutation were sequenced. 4 plants bear the nrpe1 mutation and 3 plants have NRPE1 WT all...
ORGANISM(S): Solanum lycopersicum 
2021-07-02 | E-MTAB-10565 | biostudies-arrayexpress
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