Mass cytometry - OmicsDI

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Repository

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Technology Type

Mass Spectrometry (324)
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MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (47)
NextSeq 500 (34)
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Illumina HiSeq 2500 (18)
Illumina HiSeq 2000 (9)
NextSeq 550 (8)
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R software (1)
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Miltenyi Biotec (cat no. 130-096-730) ,Fortessa X-20 flow cytometer (BD Biosciences) (1)
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10x machine (1)
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NanoDrop ND-1000A spectrophotometer. Agilent Bioanalyzer 2100 (1)

Publication Date

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2016 (34)
2017 (32)
2008 (20)
2009 (17)
2006 (7)
2007 (6)
2005 (2)
2004 (1)

CHEBI ID

CHEBI:16335 (14)
CHEBI:15891 (14)
CHEBI:28044 (13)
CHEBI:16610 (12)
CHEBI:15354 (12)
CHEBI:16708 (11)
CHEBI:16919 (11)
CHEBI:17368 (11)
CHEBI:25017 (10)
CHEBI:6650 (10)
CHEBI:17750 (10)
CHEBI:16027 (10)
CHEBI:17596 (10)
CHEBI:30769 (10)
CHEBI:49033 (9)
CHEBI:16856 (9)
CHEBI:18186 (9)
CHEBI:16750 (9)
CHEBI:15428 (9)
CHEBI:17154 (9)
CHEBI:27266 (9)
CHEBI:71464 (8)
CHEBI:17822 (8)
CHEBI:16680 (8)
CHEBI:26271 (8)
CHEBI:17126 (8)
CHEBI:16811 (8)
CHEBI:17533 (8)
CHEBI:17724 (8)
CHEBI:24898 (8)

Metabolite Name

Taurine (13)
Adenosine (13)
Hypoxanthine (12)
Phenylalanine (10)
Tyrosine (10)
Leucine (10)
Uracil (10)
Choline (10)
Arginine (9)
Valine (9)
Isoleucine (9)
Spermidine (9)
Pantothenic acid (9)
Xanthosine (9)
Spermidine (9)
Guanine (9)
Adenine (9)
Xanthine (9)
Creatine (9)
Inosine (9)
Tryptophan (8)
Serine (8)
Proline (8)
Kynurenine (8)
Methionine (8)
Glutamine (8)
Ornithine (8)
Adenosine (8)
Glutathione (8)
Riboflavin (8)

First Public Date

2025 (64)
2026 (50)
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2023 (40)
2021 (29)
2022 (19)
2019 (14)
2020 (11)
2018 (11)
2017 (9)
2016 (3)
2015 (3)
2014 (2)

Modification

15.994915 (1)
57.021464 (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (234)
RNA-seq of coding RNA (74)
RNA-seq of coding RNA from single cells (60)
ChIP-seq (33)
Transcription profiling by tiling array (13)
Comparative genomic hybridization by array (13)
Other (8)
DNA-seq (6)
Methylation profiling by array (5)
Transcription profiling by RT-PCR (4)
Methylation profiling by high throughput sequencing (4)
RNA-seq of non coding RNA (4)
Baseline (3)
Animal - Single-cell sequencing (3)
Human - High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
ATAC-seq (3)
Unknown experiment type (2)
MicroRNA profiling by array (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
Animal - One-color microarray (1)
Human - Single-cell sequencing (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Trajectory (1)
RNAi profiling by array (1)
ChIP-chip by array (1)

Release Date

2025 (450)
2022 (446)
2024 (414)
2023 (405)
2021 (363)
2020 (278)
2019 (242)
2018 (161)
2017 (130)
2016 (95)
2014 (95)
2015 (94)
2026 (65)
2012 (65)
2013 (64)
2010 (53)
2011 (45)
2009 (25)
2008 (24)
2006 (10)
2007 (7)
2005 (4)
2004 (3)
2003 (1)
1998 (1)

Lab affiliation

Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
Department of Medicine and General Cytometry Service-Nucleus, Cancer Research Centre (CSIC/USAL/IBSAL). Avda. Universidad de Coimbra, S/N, 37007 Salamanca, Spain. Phone: +34 923294811 Fax: +34 923294743 (2)
Department of Medicine and General Service of Cytometry, Cancer Research Centre-IBMCC, IBSAL. University of Salamanca-CSIC, Campus Miguel de Unamuno s/n, 37007 Salamanca, Spain (2)
Head of the Curie Institute Mass Spectrometry Platform (2)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (2)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg,CNRS, IPHC UMR 7178, 67087 Strasbourg,France (2)
Laboratory of mass spectrometry, Sanquin Research, Amsterdam, NL (2)
NICM Health Research Institute, Western Sydney University (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Sanquin Research, Amsterdam, NL (2)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
1Laboratory of Cytometry, Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland (1)
1Platelet Proteomics Group, Center for Research in Molecular Medicine and Chronic Diseases (CIMUS), Universidade Santiago de Compostela; and Instituto de Investigación Sanitaria de Santiago (IDIS), Santiago de Compostela, Spain. (1)
AG Functional Proteomics, University Hospital Jena (1)
Affiliated hospital of Nantong university (1)
Allakos Inc. (1)
AnimalS health Territories Risks Ecosystems (ASTRE Unit CIRAD), France (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (lab head) (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Str. 4 85354 Freising Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar (BayBioMS@MRI), TUM School of Medicine and Health, Technical University of Munich (TUM), 81675 München, Germany (1)
Baylor College of Medicine Radiation Oncology (1)
Berlin Insitute of Health, Proteomics Platform, Charité University Medicine, Berlin, Germany (1)
Bioheat and mass transfer laboratory, Med-X Research Institute, Shanghai Jiao Tong University (1)
Biological Mass Spectrometry Lab Department of Translational Medicine (DiMeT) Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale Novara, Italy (1)
Biomedical & Life Sciences, Lancaster University, UK. (1)
Biomedical research centre University of British Columbia (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands (1)
Broad Institute (1)

Location

Germany (1)

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In-depth organic mass cytometry reveals differential contents of 3-hydroxybutanoic acid at the single-cell level

Comprehensive single-cell metabolic profiling is critical for revealing phenotypic heterogeneity and elucidating the molecular mechanisms underlying biological processes. However, single-cell metabolomics remains challenging because of the limited metabolite coverage and inability to discriminate is...

2026-08-14 | MTBLS8113 | MetaboLights

Flow cytometry has a significant impact on the cellular metabolome (CE-MS assay)

The characterization of specialized cell subpopulations in a heterogeneous tissue is essential for understanding organ function in health and disease. A popular method of cell isolation is fluorescence-activated cell sorting (FACS) based on probes that bind surface or intracellular markers. In this ...

2018-11-06 | MTBLS633 | MetaboLights

Flow cytometry has a significant impact on the cellular metabolome (GC-MS assay)

2018-11-06 | MTBLS634 | MetaboLights

Flow cytometry has a significant impact on the cellular metabolome (General LC-MS assay)

2018-11-06 | MTBLS629 | MetaboLights

Flow cytometry has a significant impact on the cellular metabolome (Lipidomic LC-MS assay)

2018-11-06 | MTBLS631 | MetaboLights

Human Bone Marrow Assessment by Single Cell RNA Sequencing, Mass Cytometry and Flow Cytometry [scRNA]

PRJNA492227 | ENA

Human Monocyte Heterogeneity as Revealed by High-Dimensional Mass Cytometry

PRJNA610596 | ENA

Human Bone Marrow Assessment by Single Cell RNA Sequencing, Mass Cytometry and Flow Cytometry