Matthews M A MA

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Unknown (593)
Genomics (9)
Proteomics (6)
Transcriptomics (4)
Metabolomics (2)
Models (1)

Organisms

Homo sapiens (12)
Bos taurus (2)
Arachis hypogaea (1)
Aedes aegypti aegypti (1)
Aspergillus fumigatus CEA10 (1)
Mus musculus (1)
Toxoplasma gondii (1)

Repository

EGA (9)
pride (6)
biostudies-arrayexpress (4)
MetaboLights (2)
BioModels (1)

Tissue

Cell culture (3)
Acute myeloid leukemia cell line (1)
B-lymphoblastoid cell line (1)
Diffuse large B-cell lymphoma cell line (1)
Early embryonic cell (1)
Heart (1)

Disease

Fungal infectious disease (1)

Technology Type

Mass Spectrometry (6)
Shotgun proteomics (3)
Mass spectrometry (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Bottom-up proteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Immunopeptidomics (1)
Proteogenomics (1)

Instrument Platform

Exactive (Thermo Scientific) (1)
LTQ FT ULTRA (Thermo Scientific) (1)

Publication Date

2024 (2)
2009 (2)
2012 (1)
2011 (1)
2019 (1)
2015 (1)
2025 (1)
2023 (1)
2021 (1)
2020 (1)
2017 (1)

CHEBI ID

CHEBI:131440 (1)
CHEBI:131993 (1)
CHEBI:132032 (1)
CHEBI:132034 (1)
CHEBI:132054 (1)
CHEBI:132403 (1)
CHEBI:132449 (1)
CHEBI:132450|CHEBI:132451|CHEBI:132452 (1)
CHEBI:132453|CHEBI:84722|CHEBI:132454|CHEBI:84721 (1)
CHEBI:132455|CHEBI:132456 (1)
CHEBI:132457|CHEBI:132458 (1)
CHEBI:132459|CHEBI:132461 (1)
CHEBI:132478 (1)
CHEBI:132485 (1)
CHEBI:132487|CHEBI:77360|CHEBI:77527 (1)
CHEBI:132488 (1)
CHEBI:132489 (1)
CHEBI:132490 (1)
CHEBI:132491 (1)
CHEBI:132492|CHEBI:132493 (1)
CHEBI:132494 (1)
CHEBI:132495 (1)
CHEBI:132499 (1)
CHEBI:132500 (1)
CHEBI:132501 (1)
CHEBI:132502 (1)
CHEBI:132503 (1)
CHEBI:132538 (1)
CHEBI:132539 (1)
CHEBI:132540 (1)

Metabolite Name

(-)-epigallocatechin (1)
(4-chloro-2-methylphenoxy)acetic acid (1)
(R)-2-hydroxystearic acid (1)
(alkaloid) (1)
1,1-(OH)2-3,4-Didehydrolycopene|3,1-(OH)2-gamma-Carotene|Parasiloxanthin (1)
13C of 391.24901 (1)
13C of 463.30678 (1)
13C of 629.4575336 (1)
13C of 644.59866 (1)
13C of 656.59826 (1)
13C of 748.48356 (1)
13C of ['NA', 'Arachidyl palmitoleate', 'Behenyl myristoleate', 'Myristoleyl behenate', 'Oleyl stearate', 'Palmitoleyl arachidate', 'Stearyl oleate'] (1)
13C to 364.21295 (1)
13C to 390.22861 (1)
13C to 717.29411 (no identification) (1)
13C2 of 644.59866 (not ID'd) (1)
3'-AMP (1)
3-coumaric acid (1)
3-hydroxybenzoic acid (1)
3-methyl-2-oxovaleric acid (1)
34S to 597.474? (which is not on list) (1)
37Cl of 146.01451 (1)
4-guanidinobutanoic acid (1)
4-hydroxybenzaldehyde (1)
4-hydroxybenzoic acid (1)
4-methyl-2-oxopentanoic acid (1)
C27H39COOH? (1)
C42H76NO3- (1)
D-altrose (1)
D-arabinitol (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (2)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (70)
2021 (66)
2023 (60)
2020 (54)
2024 (52)
2015 (35)
2019 (32)
2018 (32)
2016 (30)
2025 (29)
2017 (24)
2012 (23)
2014 (22)
2013 (17)
2011 (16)
2010 (11)
2009 (6)
2008 (6)
2007 (4)
2026 (3)
2005 (2)
2006 (1)
2004 (1)
2002 (1)

Lab affiliation

1 Department of Computer Science, Hanyang University, Seoul 04763, Republic of Korea 2 Institute for Artificial Intelligence Research, Hanyang University, Seoul 04763, Republic of Korea (1)
Institute of Cancer Research (1)
Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, Oxford, UK (1)
School of Cellular and Molecular Medicine, Faculty of Biomedical Sciences, University of Bristol, Bristol, BS81TD (1)
UVM (1)
Unité des Aspergillus 28, rue du Docteur Roux 75015 Paris (1)

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Development of a Novel Lead that Targets M. tuberculosis Polyketide Synthase 13.

Not available

S-EPMC5509550 | biostudies-literature

Richards2016 - Genome-scale metabolic reconstruction of Methanococcus maripaludis (iMR539)

Richards2016 - Genome-scale metabolic reconstruction of Methanococcus maripaludis (iMR539) This model is described in the article: Exploring Hydrogenotrophic Methanogenesis: a Genome Scale Metabolic Reconstruction of Methanococcus maripaludis. Richards MA, Lie TJ, Zhang J, R...

2024-10-15 | BIOMD0000001099 | BioModels

FROG

Desikan-Killiany-Tourville Atlas Compatible Version of M-CRIB Neonatal Parcellated Whole Brain Atlas: The M-CRIB 2.0.

Not available

S-EPMC6371012 | biostudies-literature

RNA-seq profiling of theca and granulosa tissue of dominant follicle at 3 stages of follicular development in cows and heifers.

Cellular mechanisms that contribute to low estradiol concentrations produced by the preovulatory ovarian follicle in cattle with a compromised metabolic status (such as lactatino) are largely unknown. To gain insight into the main metabolic mechanisms affecting preovulatory follicle function RNAseq ...

ORGANISM(S): Bos taurus

2012-06-15 | E-GEOD-34317 | biostudies-arrayexpress

Health system capacity to manage diabetic ketoacidosis in nine low-income and lower-middle income countries: A cross-sectional analysis of nationally representative survey data.

Not available

S-EPMC9718963 | biostudies-literature

Indole Alleviates Diet-Induced Hepatic Steatosis and Inflammation in a Manner Involving Myeloid Cell 6-Phosphofructo-2-Kinase/Fructose-2,6-Biphosphatase 3.

Not available

S-EPMC7365739 | biostudies-literature

An efficient method and device for transfer of semisolid materials into solid-state NMR spectroscopy rotors.

Not available

S-EPMC4818695 | biostudies-literature

Protein expression, purification, crystallization and crystallographic studies of BPSL0741 from Burkholderia pseudomallei.